miRNA 290 details

Id Micro290
SequenceTGACAACGAGAGAGAGCACGC 
Annotated namesatr-miR535; cpa-miR535; mdm-miR535a; osa-miR535-5p; pab-miR535; ppe-miR535a; ppt-miR535a; ppt-miR535b; ppt-miR535c; ppt-miR535d; rco-miR535; vvi-miR535a; vvi-miR535b; vvi-miR535c; 
Annotated pre-miRNANone

Targets of miRNA 290

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_151042; FTRINITY_DN65749_c0_g1_i1 44 64 TTGTGTTCTTTTTTGTTGTTA BLAST psRNATarget
Ll_transcript_9090; FTRINITY_DN56858_c2_g2_i1 698 718 CTGTGCTTTCTCATGTTGTCA BLAST psRNATarget
Ll_transcript_237840; FTRINITY_DN54444_c1_g10_i1 206 226 TTTTTCTCTCTCTCGTTGTCG BLAST psRNATarget
Ll_transcript_227844; FTRINITY_DN52766_c0_g10_i1 1677 1697 GCATGCTTTCTTTCGTTGTCT BLAST psRNATarget
Ll_transcript_110457; FTRINITY_DN55446_c3_g1_i8 882 902 TCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_110450; FTRINITY_DN55446_c3_g1_i2 1608 1628 TCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_65748; FTRINITY_DN55350_c2_g1_i16 154 174 TCCTGCTCTCTGTTGTTGTCA BLAST psRNATarget
Ll_transcript_261795; FTRINITY_DN51293_c0_g1_i1 1264 1284 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_110453; FTRINITY_DN55446_c3_g1_i4 3358 3378 TCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_261807; FTRINITY_DN51293_c0_g1_i11 2069 2089 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_261799; FTRINITY_DN51293_c0_g1_i4 1962 1982 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_261805; FTRINITY_DN51293_c0_g1_i9 1981 2001 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_261796; FTRINITY_DN51293_c0_g1_i2 2069 2089 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_108402; FTRINITY_DN26005_c0_g2_i1 329 349 TGATGCTCTCTCCTGTTGTCA BLAST psRNATarget
Ll_transcript_274440; FTRINITY_DN54275_c3_g11_i1 35 55 TGGGGCTCTCTTTCGTTATCA BLAST psRNATarget
Ll_transcript_141016; FTRINITY_DN54004_c8_g1_i1 11 31 GTGTGCCCTCTCTTGTTGCTA BLAST psRNATarget
Ll_transcript_240861; FTRINITY_DN53045_c0_g1_i17 1583 1603 GCATATTCTCTCTCGTTGTTG BLAST psRNATarget
Ll_transcript_32675; FTRINITY_DN58447_c3_g1_i2 34 54 TCGTGCTATCTTGTGTTGTCA BLAST psRNATarget
Ll_transcript_273892; FTRINITY_DN54233_c7_g1_i1 691 711 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_44200; FTRINITY_DN54130_c0_g1_i4 9 29 CCTTGTTCTCTTTTGTTGTTG BLAST psRNATarget
Ll_transcript_44207; FTRINITY_DN54130_c0_g1_i10 9 29 CCTTGTTCTCTTTTGTTGTTG BLAST psRNATarget
Ll_transcript_44198; FTRINITY_DN54130_c0_g1_i2 9 29 CCTTGTTCTCTTTTGTTGTTG BLAST psRNATarget
Ll_transcript_44201; FTRINITY_DN54130_c0_g1_i5 9 29 CCTTGTTCTCTTTTGTTGTTG BLAST psRNATarget
Ll_transcript_195854; FTRINITY_DN54343_c0_g1_i2 661 681 TGGTACTCTCTCTCGTTGTGT BLAST psRNATarget
Ll_transcript_81848; FTRINITY_DN49852_c0_g2_i1 1332 1352 ACTTGCTCTTTCTCTTTGTTA BLAST psRNATarget
Ll_transcript_196535; FTRINITY_DN54365_c7_g2_i21 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_24376; FTRINITY_DN53831_c1_g1_i5 923 943 TTGTGCTCTCTCTGATTGTTA BLAST psRNATarget
Ll_transcript_196531; FTRINITY_DN54365_c7_g2_i17 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_68079; FTRINITY_DN55052_c3_g1_i6 1263 1283 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_196530; FTRINITY_DN54365_c7_g2_i16 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_68074; FTRINITY_DN55052_c3_g1_i2 1343 1363 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_68076; FTRINITY_DN55052_c3_g1_i4 1360 1380 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_68073; FTRINITY_DN55052_c3_g1_i1 1445 1465 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_24374; FTRINITY_DN53831_c1_g1_i3 923 943 TTGTGCTCTCTCTGATTGTTA BLAST psRNATarget
Ll_transcript_68082; FTRINITY_DN55052_c3_g1_i8 1768 1788 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_196515; FTRINITY_DN54365_c7_g2_i4 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_24372; FTRINITY_DN53831_c1_g1_i1 923 943 TTGTGCTCTCTCTGATTGTTA BLAST psRNATarget
Ll_transcript_68085; FTRINITY_DN55052_c3_g1_i9 1870 1890 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_196527; FTRINITY_DN54365_c7_g2_i13 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196523; FTRINITY_DN54365_c7_g2_i10 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196525; FTRINITY_DN54365_c7_g2_i11 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196539; FTRINITY_DN54365_c7_g2_i25 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196521; FTRINITY_DN54365_c7_g2_i8 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196512; FTRINITY_DN54365_c7_g2_i1 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196529; FTRINITY_DN54365_c7_g2_i15 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196528; FTRINITY_DN54365_c7_g2_i14 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196542; FTRINITY_DN54365_c7_g2_i27 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196516; FTRINITY_DN54365_c7_g2_i5 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196537; FTRINITY_DN54365_c7_g2_i23 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196536; FTRINITY_DN54365_c7_g2_i22 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196541; FTRINITY_DN54365_c7_g2_i26 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196514; FTRINITY_DN54365_c7_g2_i3 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196517; FTRINITY_DN54365_c7_g2_i6 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_196526; FTRINITY_DN54365_c7_g2_i12 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_191168; FTRINITY_DN55766_c0_g4_i1 244 264 AATTGTTCTTTTTTGTTGTTA BLAST psRNATarget
Ll_transcript_56803; FTRINITY_DN57867_c0_g3_i1 366 386 ATATGCTCTCTTTTTTTGTCA BLAST psRNATarget
Ll_transcript_180231; FTRINITY_DN53554_c5_g1_i7 381 401 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_180227; FTRINITY_DN53554_c5_g1_i5 518 538 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_180222; FTRINITY_DN53554_c5_g1_i3 381 401 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_180219; FTRINITY_DN53554_c5_g1_i1 518 538 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_103580; FTRINITY_DN54962_c4_g6_i1 1660 1680 TAGTGTTTTCTCTCATTGTCT BLAST psRNATarget
Ll_transcript_153104; FTRINITY_DN51661_c0_g1_i1 496 516 GTGAGCTGTCTTTTGTTGTCG BLAST psRNATarget
Ll_transcript_153106; FTRINITY_DN51661_c0_g1_i3 496 516 GTGAGCTGTCTTTTGTTGTCG BLAST psRNATarget
Ll_transcript_103583; FTRINITY_DN54962_c4_g6_i2 2203 2223 TAGTGTTTTCTCTCATTGTCT BLAST psRNATarget
Ll_transcript_226343; FTRINITY_DN56164_c4_g1_i6 1834 1854 CTTTGTTTTTTCTTGTTGTTA BLAST psRNATarget
Ll_transcript_200781; FTRINITY_DN56403_c1_g3_i2 7 27 TCTTACTCTCTCTTGTTGTCT BLAST psRNATarget
Ll_transcript_112672; FTRINITY_DN55434_c4_g5_i1 276 296 TCTTACTCTCTCTTGTTGTCT BLAST psRNATarget
Ll_transcript_212187; FTRINITY_DN58307_c5_g8_i2 848 868 TCTTACTCTCTCTTGTTGTCT BLAST psRNATarget
Ll_transcript_533991; TRINITY_DN69128_c0_g1_i1 103 123 TTGTGTTCTTTTTTGTTGTTA BLAST psRNATarget
Ll_transcript_460375; TRINITY_DN51113_c0_g8_i2 280 300 CTGTGCTTTCTCATGTTGTCA BLAST psRNATarget
Ll_transcript_512722; TRINITY_DN46856_c6_g1_i3 2527 2547 GCATGCTTTCTTTCGTTGTCT BLAST psRNATarget
Ll_transcript_512720; TRINITY_DN46856_c6_g1_i1 2604 2624 GCATGCTTTCTTTCGTTGTCT BLAST psRNATarget
Ll_transcript_512734; TRINITY_DN46856_c6_g1_i5 2761 2781 GCATGCTTTCTTTCGTTGTCT BLAST psRNATarget
Ll_transcript_512721; TRINITY_DN46856_c6_g1_i2 2865 2885 GCATGCTTTCTTTCGTTGTCT BLAST psRNATarget
Ll_transcript_533496; TRINITY_DN50018_c3_g1_i12 201 221 GCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_533491; TRINITY_DN50018_c3_g1_i7 5002 5022 GCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_533486; TRINITY_DN50018_c3_g1_i3 1704 1724 TCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_533495; TRINITY_DN50018_c3_g1_i11 1919 1939 TCTCGCTCTTTCTCGTTGTTA BLAST psRNATarget
Ll_transcript_426590; TRINITY_DN45502_c0_g1_i5 357 377 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_416573; TRINITY_DN49644_c2_g1_i8 2123 2143 TCCTGCTCTCTGTTGTTGTCA BLAST psRNATarget
Ll_transcript_426593; TRINITY_DN45502_c0_g1_i8 2082 2102 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_426592; TRINITY_DN45502_c0_g1_i7 2105 2125 TTGTGTTTTTTCTCATTGTCA BLAST psRNATarget
Ll_transcript_416570; TRINITY_DN49644_c2_g1_i5 2123 2143 TCCTGCTCTCTGTTGTTGTCA BLAST psRNATarget
Ll_transcript_416578; TRINITY_DN49644_c2_g1_i12 2569 2589 TCCTGCTCTCTGTTGTTGTCA BLAST psRNATarget
Ll_transcript_524732; TRINITY_DN39483_c0_g2_i1 267 287 TGATGCTCTCTCCTGTTGTCA BLAST psRNATarget
Ll_transcript_386624; TRINITY_DN50949_c1_g1_i7 128 148 TGGTACTCTCTCTCTTTGTTA BLAST psRNATarget
Ll_transcript_395180; TRINITY_DN472_c0_g1_i1 455 475 ATGTGCTTTCTCTCTTTGTTT BLAST psRNATarget
Ll_transcript_470505; TRINITY_DN40464_c0_g2_i1 58 78 TGAAGCTCTCTCTCTTTGTCA BLAST psRNATarget
Ll_transcript_332577; TRINITY_DN20561_c0_g1_i1 236 256 ACTTGCTCTTTCTCTTTGTTA BLAST psRNATarget
Ll_transcript_285362; TRINITY_DN48800_c3_g1_i1 525 545 TTATGCTTTCTTTTGTTGTCT BLAST psRNATarget
Ll_transcript_296990; TRINITY_DN51790_c4_g1_i5 622 642 TGGTACTCTCTCTCGTTGTGT BLAST psRNATarget
Ll_transcript_296988; TRINITY_DN51790_c4_g1_i3 642 662 TGGTACTCTCTCTCGTTGTGT BLAST psRNATarget
Ll_transcript_495346; TRINITY_DN43107_c0_g1_i1 970 990 TTGTGCTCTCTGTCTTTGTTA BLAST psRNATarget
Ll_transcript_285027; TRINITY_DN48860_c1_g1_i15 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285030; TRINITY_DN48860_c1_g1_i17 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_527390; TRINITY_DN47504_c0_g1_i4 61 81 CCTTGTTCTCTTTTGTTGTTG BLAST psRNATarget
Ll_transcript_285017; TRINITY_DN48860_c1_g1_i5 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285281; TRINITY_DN48833_c2_g1_i1 444 464 TTGTGCTCTCTCTGATTGTTA BLAST psRNATarget
Ll_transcript_316328; TRINITY_DN46796_c2_g2_i8 1296 1316 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_316325; TRINITY_DN46796_c2_g2_i6 1364 1384 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_316332; TRINITY_DN46796_c2_g2_i11 1398 1418 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_296987; TRINITY_DN51790_c4_g1_i2 1688 1708 TGGTACTCTCTCTCGTTGTGT BLAST psRNATarget
Ll_transcript_316314; TRINITY_DN46796_c2_g2_i2 1720 1740 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_316311; TRINITY_DN46796_c2_g2_i1 1721 1741 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_316326; TRINITY_DN46796_c2_g2_i7 1823 1843 TTTTGCTCTTTCTTGTTGTTT BLAST psRNATarget
Ll_transcript_285018; TRINITY_DN48860_c1_g1_i6 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285016; TRINITY_DN48860_c1_g1_i4 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285024; TRINITY_DN48860_c1_g1_i12 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285020; TRINITY_DN48860_c1_g1_i8 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285021; TRINITY_DN48860_c1_g1_i9 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285026; TRINITY_DN48860_c1_g1_i14 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285029; TRINITY_DN48860_c1_g1_i16 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_285025; TRINITY_DN48860_c1_g1_i13 628 648 TTGTGTTCTTTTTCTTTGTCG BLAST psRNATarget
Ll_transcript_434447; TRINITY_DN46670_c3_g3_i3 376 396 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_434455; TRINITY_DN46670_c3_g3_i5 545 565 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_279891; TRINITY_DN50129_c0_g3_i1 1315 1335 AATTGTTCTTTTTTGTTGTTA BLAST psRNATarget
Ll_transcript_434454; TRINITY_DN46670_c3_g3_i4 376 396 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_434438; TRINITY_DN46670_c3_g3_i2 545 565 CAGTGTTCTCTATTGTTGTCT BLAST psRNATarget
Ll_transcript_494871; TRINITY_DN43671_c0_g1_i1 373 393 GTGAGCTGTCTTTTGTTGTCG BLAST psRNATarget
Ll_transcript_456356; TRINITY_DN49949_c1_g1_i7 1827 1847 CTTTGTTTTTTCTTGTTGTTA BLAST psRNATarget
Ll_transcript_494872; TRINITY_DN43671_c0_g1_i2 373 393 GTGAGCTGTCTTTTGTTGTCG BLAST psRNATarget
Ll_transcript_456360; TRINITY_DN49949_c1_g1_i11 1922 1942 CTTTGTTTTTTCTTGTTGTTA BLAST psRNATarget
Ll_transcript_516289; TRINITY_DN50874_c0_g1_i8 2566 2586 ATATGCTCTCTTTTTTTGTCA BLAST psRNATarget
Ll_transcript_516283; TRINITY_DN50874_c0_g1_i5 3034 3054 ATATGCTCTCTTTTTTTGTCA BLAST psRNATarget
Ll_transcript_516292; TRINITY_DN50874_c0_g1_i11 3106 3126 ATATGCTCTCTTTTTTTGTCA BLAST psRNATarget
Ll_transcript_516306; TRINITY_DN50874_c0_g1_i19 3543 3563 ATATGCTCTCTTTTTTTGTCA BLAST psRNATarget
Ll_transcript_342337; TRINITY_DN49823_c5_g1_i1 231 251 CTGTGATTTTTTTCGTTGTCC BLAST psRNATarget
Ll_transcript_353310; TRINITY_DN49451_c1_g1_i1 47 67 TCTTACTCTCTCTTGTTGTCC BLAST psRNATarget
Ll_transcript_506211; TRINITY_DN52530_c5_g9_i1 334 354 TCTTACTCTCTCTTGTTGTCC BLAST psRNATarget
Ll_transcript_427598; TRINITY_DN69940_c0_g1_i1 303 323 AATTGATCTCTCTTGTTGTCC BLAST psRNATarget

Expression of miRNA 290


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)