| Id Trinity | FTRINITY_DN50318_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_232845 |
| Sequence | CTCACTCTCAGCGAATCCCATACAATCGATACACTCAGAATTCAGAAATGACGGATGAAGAGTCTCCAACCACCGCAACCGCCACCGGGAGGCGAAGGGC CAGAGGACCAGAGGCCTCCGCCCGAAGCGAAGCCCTAGAACGGCTCAAAGCCCGTCTCCGCGGCGGCCGCAGATCTGACGACGGCGGTCCCCAAATCAGG TTAGAAAACCCTATTTACGACACTGTACCTGAGGACGAGTATAACGCCCTCGTCGCCAAGCGCCGTGAACAAGCGCAATCGTTCATCGTCGATGATGACG GCCTTGGTTACGGTGACGAAGGTGAAGAAGAGGATTGGTCAAAAGCTGGATTCACACTCTCAGATGAATCAGACGGTGAATTCGAGAGACCGAAGCGGAA GAAAGTTGAAAAGAAAGATCCTCAAACGAAACGTGCTTCTGCTTCTTCTGCCTCGCTTTCAGCTGCTGCATCCATTATGGGCGCGAATAGGTTATCGTCG ATGTTCACTTCATCAGTTTTCAAGAAGAGAGATGATAAGTCATGTGACAGCATCGTTGATGATGTGATCGCGGAGTTTGCGCCAGATGAGAATGATAGAC AAAGGCGTAGAAGAGTGCAATTGAATTCGGTTTCCACTGAATCTGGTGCCAGTGAAGCAATAAGGATTAACAGTGCTTTTAGTGAGAAACCGTTGATTGG CGACTCTACTGATTCAATTAGAGGTCATACTGTTGCAAATCGTGACGCCGAATCAGTTAGGGTTGTTAAGAATACTAATAGTTCTGACTTAGGTTTAGAG AAAAATTATGACACTATTAAAGAAAATGTGTCATGTGTTGAGGATGGAAAAGATTTTAGTTCTGAAAATGGTGAATCATCAATTGAGCAAGTGCAACCTA ATGGAAATTTAGTCGAGGAGAAGGTGACTAAGGAAATTGAAGTAGAAAGGAAACCGGCTACAAAAAATGAGGTGTTTACACTGAATGCGAAGGTTAGTAA GGAAGCTGACCAGGGATTGAGTGCAACTGCAGATTGGAAAGCATTGAAAAGTGGTGGAGTGGAGAACATTGTTGCTGATTCGAAAGTGGCGAGGGAAGCT TCGAATGCCGAACAAAACTCAGAGTTTAATCTCGATAAAGATGGATTACTGCCTTTCTATTTGCTAGATGCATACGAGGAGTTTAAAGGAGTCAATGCAG GCACAGTTTATTTGTTTGGGAAGGTCAAAGCCGGGAACATGTATCAGAGTTGCTGTATTATTGCGAAGAATATTCATAGATGTGTCTATGCAATTCCAAC TCATCCTTTACATTACACTGATGAGATAATAAAGCTTGAGAAAGATGTACAGGAATCTCAAATTTCTTCAGCCGATTTCAATAAAAAGTTACAAGATGCA GTATCTGGTTTAAAGAACGAGATAACAAAACATCTCTTGGATCTGAATGTATCAACCTTTACCATGGCACCTGTGAAGAGAAAGTATGCATTTGAGCATT CTGAAATTCCTGCTGGTGAAAACTATGTGGTGAAAATCAATTATCCATTCAAGGATCCAGAACTTCCAGTAAATCTCAGAGGAGAAAGTTTCTGTGCCCT TTTAGGAACTCAATGCAGTGCACTGGAACTTCTTTTGATTAAAAGGAAGATAAAGGGGCCTTCATGGCTACACATTTCGAACTTTTCTACCCCCACAGCT TCTCAAAGGGTTAGCTGGTGCAAGTCTGAAGTGATTGTAGACTCTCCTAAAGACATAAAGATCCCAGCTTCCTCAAAAACCCCTCCTGAGATTCCTCCTG TGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACAGGACATAAATGAGATTGTATCTGCATCCATTGTCAGCTGCAACAGGGTTAAGAT TGATACTCCAATGTTGGCTTCAGAGTGGAAGAGAGCTGAAATGTTGACCCATTTTACCGTGGTCCGAAAACTTGATGGGACTATATTTCCACTGGGGTTC AGTAAGGAGGTCACAGACAGGAACACAAAAGCTAGGTCAAATGTTCTTTTTGTTGAAAGCAGTGAAAGAGCTTTGTTAAACCGTCTGATGATAGAGCTAC ACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTCGATGTTCTTCTCCACAGATCCCAGGCTTTGAAAGTACCACCCAGGTT CTGGTCTAAACTAGGTCGCCTCAATCGTTCTGTCATGCCTAAGCTTGACAGAAAATACAAAGGTTCTGGAGCTAGTCATGGTATCATGTCCTGCATTGCT GGCCGGCTTCTTTGTGATACATATTTGTCATCCCGTGAGCTATTAAAGGAGGTTAGCTATTCTTTAACTCAACTAGCAAAAACACAACTGAACATGGTCC GGAGGGAAGTTGCTCCACACGACATTCCAAAGAAGTTCCAATCAGCAGAATCCTTAATGGAGCTTATTGAATATGGTGAGACAGATGCTGTGTTGTCTAT GGAACTCATGTTTCATTTATGTGTTCTTCCTCTCACACGTCATCTGACTAATATAAGTGGAAACATGTGGGGGAAAACACTTCAGGGTGCTCGGGCACAG AGAGTGGAATATCTTTTGTTGCATGCTTTCCATGCAAAAAAATATATTGTGCCAGACAAGGTCTCGGTCTATGCAAAAGAAACAAAATTGCCAAAACGCA GAGCACCTAATGGTGTTGATGATAGTAACTTTGATGAAGCAGATATTGATGATGCGAACTATGATAATGTTGCTGGCAACGGTGATAATAAGAAAAGCAA GAAGACTTCTTCCTATGCCGGGGGATTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTTCTGGACTTTAATAGTCTTTATCCTTCT ATCATCCAGGAGTATAACATCTGCTTCACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAG AGTTGCTGAGAAATCTGGTTGAAAGGAGGAGAATGGTAAAGTCATGGATGAAGAAAGAATCAGGCCTTAAACTCCAGCAATTGGACATTCAGCAGCAAGC ACTGAAACTCACTGCAAACAGTATGTATGGATGCCTGGGCTTTTCCAATTCAAGATTTTATGCAAAGCCACTAGCCGAGCTTATTACCCTACAAGGAAGG GAAATACTGCAGAGCACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTTATCTATGGTGACACTGATTCAATAATGATTTACAGTGGACTAGATG ATATTGCAAAATCAAAAGCAATGGCTGGAAAAGTTATTCAAGAAGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAAT GCTACTACTTAAGAAAAAGAAATATGCAGCCGTAAAGGTGCAGTTCAAAAATGGCACCCCATATGAGGTTATTGAGCGTAAAGGTCTTGATATTGTTCGT CGCGACTGGAGCTTATTAGCTAAAGAAGTAGGAGATTTTTGCTTGAGTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCAATACACAACC ATCTCATGAAGGTGCAAGAAGAAATGAGGAGTGGTGATGTACCACTGGAAAAATATGTCATCACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGA TGCTAAAAATCAACCACATGTTCTTGTGAGTCCATGATATTTTCATTTCTGTTACTTGAAACTCTCTGATCTATGTTTGCTTTTGATATGAGCTAATCAA TTATGAGGATGGCCTTTCTTGATCAAAATATAGGTGGCACAAAGATTGAAGCAACAGGGTTACTCCTCTGGCTGCTCTGTTAACGATACCATCCCTTACA TAATTTGCAATGAGCAGGGAGGTAGTTCAGGCAGTGCAACGGGCATTGCTCAGCGTGCCAGACATCCTGATGAACTTAAGCAAGAACAAGAGAAATGGAT GATTGACATTGAGTACTACTTGTCACAACAGATTCATCCTGTTGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGT TTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAAGTGATGATCCTACAAGCTCACTCTTGTTTTCTGCTGATGATGAGGAGAGGT ATCGGGGATGTGAGCCTTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACTTTTGACTGCCCACCTGTCTTCAAATCCATTTGTTTGTTAGGAAGTGGAAA GCCAACCAACCCAGGCATGGAGGATTCCAACTACAATTTCTGGCATAAGCTGCAGTGTTCTAAATGCCCAGAAGAGGGCGGTGCTGGCAGAATTTCACCT GCAATGTTAGCTAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTCACTGTACTATAAAGGTTTACTAATGTGTGATGATGAAACCTGTAAGCATACAA CCCGAACTATCAACCTTCGGTCGGTTGGTGATTCCGAAAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCATCTCCATAGAAAGTACACTGA AGCAGACTTGTACAAACAACTATCATATTTTTACCATGTGCTGGACACTGTTTCTGGTATAGAAAAGATGGAGACTAAATCTAGGATACCGGTCGAGAAA GAGTTGATGAAACTTAGGCCGGTGGTTGATATGGCAGCATCAACGATACAGGGGATCAGGGACCGCTGTGCCTATGGATGGGTGAAGCTACACGACCTAG TCATTACAGCAGATTAATTACAAATTTAAATGCCAAATCAAGTAAGAATATAGTACAGGAAAAGTGATGCCCAAATTTGAATCTACACCAGCAAGGAGTT ATTGACAGATTCTTGTTGTCCTTGTATCTTGATTTTATCAAATGTTTATGATAGCATCCTTGCATTATAAGCAAACTGATTGTGTACGTCATGTAAGCAA CATAAGGATGATTAACATCTTTATGCAATTCCCCCCACTGTTTATTATTTAAGCTGCAGTGGTTTATTATTCGGTATTGCCATTGCCCATAGAGACTAAT ATCAAATTTTCCTTTCTTGGAAAAAATATCAAATGTTTTTTTAAATAATTGCCCCCAACATAAAATGAGAAAAACATATAATGCTTCTTTAAGTGTTTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_19946; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_232845
| Blastp | DNA polymerase alpha catalytic subunit from Oryza sativa with 62.47% of identity |
|---|---|
| Blastx | DNA polymerase alpha catalytic subunit from Oryza sativa with 60.11% of identity |
| Eggnog | DNA polymerase(COG0417) |
| Kegg | Link to kegg annotations (4325052) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421313.1) |
| Pfam | DNA polymerase family B, exonuclease domain (PF03104.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |