| Id Trinity | FTRINITY_DN52449_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_86946 |
| Sequence | CACCAAAGCTGACTCGGGTCCTTTGTCTCTCTCCCTCTGCACCTCGAGCCCAAAAATTGTACTCCATTTTCATTTACTCTCACTACAAAACTACCACTAA GAACCTTCTAGAACAAAAATGCACATTTTCCTAACAAACTTCTCTTAACACTACATGCATCATTTCACTGCTTGATACATTTTCAGTTGTTAATTTTGGT TTTAACTTGTTGAAAAAGAAGATGGTGAAAAAGAACAAAAGAAAGAAGGAGGAGATTGCTGAGGATTGGTGCTTTTTATGCAAAGATGGAGGATCAATGA GGGTTTGTGATTTCAAGTAAGCTCACAAAAATGAACATTGCTACAAATTACTAAATTTGACCCTTGCAAATGAAAACCTCAAAATGCTCCTAACTCTGTT AGTAAGAATATTAAGTGATGGTTAAGTTAGTACTTGATAAGAAGTTAAGAACAAAGGAATAGTTGTCTCTCAAATTAGTACCCTTTTAACTATATTTGAG GTACTTAATGACCAAATTGAAGTTATTTTCGGGGGTTCATTTGTCAGGTTTGATTTTGGGTTGGATATTTTGATTGGTGACTAAAATGAGTACAAAAATG TTACACCCTCCTAACTAATTAGCCTAATAATCCTCCTTGTATTACTTTCATGTCACTTTCTTATGGATAGGTAGGATTTTGAAGTTAATTTGTTAGGAGG ATATAACACTACTCAAATGATTATTCGCTCTTAATTTTATTTTATATATTAAATTCGTCATTTCCAATACAAAGTTGTCGGGCTAACCAAATCCTTTTTT TATGATTTACATTTAGTAATTTGAGAAATGCTAAGAACATACTTTTCTCCATTAACACATAACTGAGTGGATTTTTTTTATAACGGTAGAGTCCACAAAA TCACATGGGTAATGGGTTCGCTATATATTTAGAGGATTCTACAAGAACTCTTGCCTATAACAGATGGCGTATTAATGAGAAAATAATCTGTTGCTAGCAT TCTTCTAGTAATTATAGTTGTGCACATTTTTTCTCTGGACATTTTTAATTTGAAAAGATGCAAGAAGCCTAAGCTAGCAATGGTTATTTTTGTGCTCAAG TAATTTGGAAATGTAAGAGATTAGAAAAGGATATGCGATAGACCATCCTAACCCCGCTTCAAAATCAAAGGCTTGGAGGAGCTATTTTTCCCAGGACATA GTCCAGATGAGTGTGAAGTGAATTCCTAAGTTTTTTTTGTATGCTCAATTGAGTTTCTTCCTTCCTTGGTAGTGACAGAATAATCCATGAAAGTGGAAAA TGTAATTTCTTATTTTTGTTTTAAATATATAAGCTTCGGGTTTTTCTAATTTACTACATAATATTGCAACTTTTCACTATTTTTAAAGAAAAAAAGGCAA GCAAGATAGTGCATGAATTTTAACATGTGCTTGTTTGCATCATTTATAAATGGTAGTATTCATTTCAAACTTGATCCGTATCCTATAGTATGTGCCTGTT TTTTGAAAAGAATAGGAATTATGAGGTAGGTTGCTCCAATAAAGAAGTTGCTGGTTTACTTTAGGTTTTAATTTATTCTTCTCCGTTGATAGAATTCTGA TTTTCTTTGAAAGATTTGAGTTTTTCTTACCCAAGTTTAGACGTCACTATTACTAGTATGTCTGTTAAATTAATGGTGGGTGAAGAGTAGGATCATTTAA CAGGGATATAATTGTCATGCACGTGACTTCCTTTTGTATAGTTAATTAACTCATGTTGTGTAAAGGGATTGCCTTAAAGTTTATCATCCAGTTTGCGCCG GAGAAGAAGATTCGTTTTTGGAGGCTGACACTTATTGGTGTTGCGCTTCACATTATTGCTTCCGTTGCCGTAGAAGCTCAAAGTTTAAGTGCATTTGCTG CCCAATAGCGGTTTGTGGGCGCTGCTTAGGTTATGGTGAATTTGCTATTGTCAAAAGGGACAAAGGATTTTGCAGCCACTGCTCAAAACTTGCACTACTA ATTGAAGAAAATGTTGATGTTGATTCTGATGGGGGAAAGGTAGATTTCAAAGATTCAAATACATATGAATCCTATTTTTTAGAATATTACGAAGCTATGA AAATAAAAGAAGGGCTGAACTCTTCACATGTGCATTCCGCGCATAACTTCTTGAAGAATGGTAAAAACCAGAGTAACTTGGATCTAGCTGGAATAGGTGA AGGGGAAGATGATGGTGGAGATTCTGAAGACGGGAGTGACTATATAGTTTCTGATTATGATGACATGAATGATACAGCAGGAGTTAAACCAATGAAGAAA AAGCAGAGATGCAAAAAGCAACTAAAATCAACAAAAGGAAATATGAAAGATAAGAAAAAGGAGTTTATTGGATGGGGTTCAAGAAGTCTCATAGAATTTC TTAATTATATTGGTAGAGATACGAGTAAAGAATGTTCTGAACATGATGTTGCTTCGGTCATTATTGAGTACTGCAAAGTAAACAACCTCTTTGACTCCAA GAAAAAGAGGAAGGTGCTTTGTGATGTAAAACTGAGTTCTTTACTCGGGAGGAAATCAGTGAATAGAAACAACATACAAAACCTTTTGGCACATCATTTT GCTGAGAATGTGGAGGAATTTGATGATATCACTAGTAGTTCAGAAAATAGGGATGATAATGGGCCATTCAAATGTTCGAGCAAGGGGAAATTGTCAAGTA CAAAATCTATTCAGAACCTAGTTCCTGAAGAGCGTAAAAGCAGTTTTGCAGCCATAGTTAGTTCAAATATCAAGCTTGTATACTTAAAGAGGAGTTTAGT GGAGGGGCTTTTGAAACAGCCAGAAACTTTTAGTGACAAAGTAATGGGAAGTTTTGTAAGAGTCAAGTCTGACCCGAATGATTATTTACAGAAGAATTCC TATCTGCTTGTGCAGGTTGTAGGAATAAACAGGTCGTCAAAGAATAACGAAATCAACGGGGAAGTTCTGCTTCAGCTTTGCTACATGCCAAAAGATGTAC CTATCTGCAAAATTTCAGATGATGACTTTACTGAGGAAGAATGTCAAGATCTCTATCAGAGAATGAAAAATGGACTGCTCAAGCAGCCTACCGTACTGGA GCTTGAACAGAAAGCGAGAAGTCTGCATGAAGATATAATAAAGCATTGGATCCCGAGGGAGCTGACACTGTTACAAAATCGCATTGATATGGCCAATGAA AAGGGGTGGAGGAGAGAATATCCTTACATGATTTGGATTTTAGATTGTTACTTAAGATTAGTAGATAAAGATCAATCAGTTCTGAATCGTTACCCAATTT AATGCAGATCAGGCATGGTTAGCTGTTAATAACTTCCCAATAGGAGAGGGGTCATAGAATATCATCTAAAAGCTCATATTATTGTTTTAATATTTTACAT ATTTTTTGTATTTCTCTCAGTTGATTTTTTTAGTATCTAATGAATATTCATTGTTAGCCTTAACCATATTTTCATACACTTGCTGAGTACATAGAGCGAA AACTGAAGCTTCAGACTGCATCAGAACAGTCACGTTTATTAAGTGATATTCCAAAAGTAATTCCTGAAATAGTTGATAGCAAACTATCACCGAAGAATTC CCCGAGAAATGATAGGCTTGAGGGAAATGGGTTGCCAGAATTAGCCATGGGAAAGACTTCCAACTCTGTCGGACGTTATCCCAAGCATAATGCTTTTGCT CGTTGGCCTCATAATACAACAGATGTTGCAGGTTTGCCTCATTCTCCTGATTGTTTTCTATCTCTGTTGTGTCCTTGTAACTTCTGCTTTTATTTCTTTT GTAAATATGTTTCTATATATAGGGTTCTTGATGTTGCTAATGTCTTGTGCATTATAATCACATTCTTATTCATACTTTGTCATTTCATGTCCTCTACAAA TTGGAGTAGCTCTCTGTTCTAATCAGTGAATGCCATGTTTTACTCAGACTGAATCAAATTTGTCTTCTGTGATATTTCTATTTGTTTCGTATGATATTTC ATCCACTATGTCCTCTTCATGGTTGTGACCTGCTTTTATATGTACATGCCTCTC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_25622; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_86946
| Blastp | Uncharacterized protein At5g08430 from Arabidopsis with 47.16% of identity |
|---|---|
| Blastx | Uncharacterized protein At5g08430 from Arabidopsis with 47.44% of identity |
| Eggnog | SWI SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member(COG5531) |
| Kegg | Link to kegg annotations (AT5G08430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419914.1) |
| Pfam | SWIB/MDM2 domain (PF02201.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |