Id Trinity | FTRINITY_DN55818_c1_g3_i20 |
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Name Transcript | Ll_transcript_266983 |
Sequence | TGAACATAGCCTAGTCTTATTTTACCATTATTTCCAACAGTGTGAGGAAGGAGTCATGAGAATTGAGCAGCATCATTTCCATATACTTGATATAGAAGAA AGTGTGTACACACGTCATTCCTTAACGTGCGCACCCCCTGCGTATTGAAATGGAGCCTCACACTTCATCATTTGTATCCAAAGCGAGAACCGCGCTTCAT TCTGCGGCTGCGAAAGCGGAGCGTGTTCTCAATGACTTCAAATCCGATCGAGATTCTGATAAACAATCGAATGATGATTTTGGAGGGAAGCAGCGGCATG AATCTCCTCGGAATGAGAACGAGTCTAAGCTTCTCAGTGAATTGAAGCATATAAAGTGGAGACCACCGCATATAGGAATAAAGCAAGATTGGCAAGATAA ATTTAACAATATTCGGAAAGGGAGAAAAGAAGTCGAAGATACAGATAAAATCCGAGACACAAACATGGCCGCTGTTCCATTTTACGATGAAAATTTGTAC ATCCTGAATATGAAATATGATGCTGATATCAAGGCTTCAGAAGCAATTCCCTCAGTTGAGGGCTTAATTGCCGCGACTAAAGACCCTATTCCTCCATCTT CTGTCATGAAGCAATTGGCTAAAGCTGTTGAGGCTGGAAGGAAAACAAATTCAATGAAAGATTTTGCAGCTTCAACTGAAGGTTCTTCACCTGCCAAAGA TAGGGCAGGCTTAACTCTCTCTGCAATGAAGGCTTTAGTGTTGCGAGAAAAGGAGGATAACCTTACCTCTGAGTTTAGTAGCAATGAGAAAGTTGGGCTC TTGATTAATTCTCTGTTTGATCCAGTTGGCGAGTTCCTCAAAAGGAAGGTAAACTCTTATCCAGATGAAGCTTGCATGACAGCTTTGCCAAGTGATATTC ATGGTGCTCCTCCGGAAAGCTTGATTGTTAAGTTAGCTGAAGTCATTGGAAACTTCAAGACGCTTAGAAAAATGGGTCTTTTCTGGTGCAGGATTGTTGT CGAACTGCGAAAATTTTGGTCTGAAGAACAATATTTACCTGGAGTTCCCCCAGATGACATTCCAGATCTGAAGTCATGTCTTCTATATCAACAATTTCAA GTAATTAATTGTTGCATCTCTCGGAAAAGGCGTCATATTATTGCAACCGAATCTCTTGATTCTCTGATGATGGAAGCCAATTCAAATGTAGAAGAATCAG AAAACAATACCAAGAAAATTCCTGCAAACCATTTATTATATGCTAAATTAAGTACAGGGGAGCTTGTTCTTCGACTAGGTGCCGAGTGCCCATCTGGAGA TATGACGTTGTTGGAAACTGGCGAGCCTGTGTACTCTCCTGTCACTCAGGAAGGACCTCTGCTTACAGAAGATCTTATCAAAGAGACTGAGGAGTTTGTG CTGCGGACAGGGAGTGTTGGCGCTGGGTGCTCTCATCTCCTGTCTGATATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTAA GATGGCACTCTCCTCCTGATTGGACAGAAAGTGAGGCAGGTACTGTGGACAGTGATTTTTTTGATAGTAGTGAGTCGTTGTCCACCAGAGGTCAGCTAAG TCTGCGAATGCAAAAAGAAGGCAATTTGTGGCGCGAATTGTGGGAAACTTCTAAACCAGTACCAGCTGTTAAACAGGCACCTCTGTTTGATGAGGATTTG GCAGTGGAGGGCATCCTCAATGCATTTGAGGACATTCGGCCTTCTGAGCTTTTTGAACAGCTGTTTATTTCTTTACTTGGTGTAGGATTAGCAATTGCTG AACCTATGCTGTCTGGTGAAAGTGACTTCTCAAAGTTGTTCAATGACTGCAAGGATTACGTAGTTACGACTTGTCAAAGCAACAAATTTAGTGAGAAAGT TGATGAGCTTGTTCAGGTGGGGGTACTAGAAGAAAATGGGGCTGATTTATGATTCTACTCGGCATCTGAATTAGTCCTAGTATTGATTCTCTCAAGTAAA TGTTCAAATTTTCACCAGTGCAGTGAACTCCAAAACTGCTTTATCCATCTAATTGAACAGTCTTTAACTATATAAAGAGGAGCCTTGAGGAAAAAGGAAC TCTTTGGGACTGGTCAAATATTGAGAAATTTGATACCATTTAACCAATCCTACTTTTTTATGTTTAGGTTCACTGACTGATAACTCGACCCGTACGAACA TGGCAATGAAAAATAATTCCTCTGAAAATGTAGACTGACAATGATACTGGAAGCTGATGATTTTTATCTTCCTATTCTAAATTACAGAACAATTGTCTAA TGGTCACATGATCACATCTATGTGTAGGTATATGAAACAGTGGAGAAAATGTTACTGAAGCCTGAGGAAGTAATAAAGATGATGAAGAAAGCAGAAGAAT CAAGTATGACTCCTGGTGAACCAAAGCGTCGGTTTAAGAGACTCCTCCTTATTTTTGGGGGTAAAGATAAAATGCTGACGAGTCCGGTCTCGAAGGATCA GACTAACGACGAAGAAAACCCGTTTCGACAATCCTTTTCCAGTTTCTTTGACAGCAAGTCATCTTTATTTTCGAAGAAGCCTCCTAAGCATGGAAGCCTT TCCCCTGCTGAGAATCCTCATTGTTTGGAAAGTGATTGGAAACTTGTCTAGACAGAGTTCAGCCTCACCCTATTTATGATAAGCAAACATGTTTTTTTGT TTTTTTGTCCCTAGCCAGATCACCGTAAATTATTTTTGTTTATTCCTTTTTAGTGATCAACAAATTTTAATGCATTCTTAAATTACCTAAACTATTACTA TTTTTTTATATTTTTTTGTATAGCATTGCTTCTTGGTGAGGGATTGTACAAGGATGATTAGTCAAATGGTATAAAACTTCCCCGTTTCCTGCAAATGTCA CGTTGCTTTTGAATATTTTCAAAGAATGCTGTTTTCCCCACTCACCCGTGTAATTCATTTTTAAGCTCAATGTACACCATGAAATTGTAACAATTTGCTT TAGTCTTATAAAAAAGGGTTGGGCAAATATGTAGTGAAAGAATTTAGTTTTAAAACATACCTCTTATGATGTTACTATTTCCTACTAGTACTTTGAGGTA CGTTTGCGAGTTGGGTTTTAGAGGAAAATGAAAGACTTCAACGTCTTCTTTCAAATGTATTTCATAGCTCTCAATTTTTAATTTCTTTTCCTCTCTTAAA TGCAACCCGAAAACATACCCTAAT BLAST |
Tissue | flowers |
Gene name | LI_gene_54724; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_266983
Blastp | Rab3 GTPase-activating protein catalytic subunit from Danio with 31.84% of identity |
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Blastx | Rab3 GTPase-activating protein catalytic subunit from Sophophora with 30.77% of identity |
Eggnog | RAB3 GTPase activating protein subunit 1 (Catalytic)(ENOG410Y2R4) |
Kegg | Link to kegg annotations (777744) |
CantataDB | Link to cantataDB annotations (CNT0002243) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019440686.1) |
Pfam | Rab3 GTPase-activating protein catalytic subunit (PF13890.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |