| Id Trinity | FTRINITY_DN56720_c5_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_188050 |
| Sequence | CACCGGCTCTCAAATTAGGGCTCCGCAAACGCCCAACATAACTATCATCAGTTGCAAAATCACTCCCATCTCAACCTTCACTAATCGATTTTGATGGCGT GCAATGGCGACGGTTGCCAATCCACTTGTTACAAAGACGAACAACCATGTTCTAAACCAATCGAATCACCAAACCTTATTAGTAAAATTTGCATTAAGTG CAAACTCAACGACGCCGTTTCTGGCTATGGCGGCGTTGATGATGGACGCTTCTGCGCCGATTGCTTTCGAAGCAACTTGTTTGGGAAGTTCAGGCTCGCT GTTACTTCGAATGCAATGATTACTCCCACTGATAAGGTTCTTGTTGCATTCTCCGGTGGCCCTTCTTCAAGGGTAGCTTTGCAGTTTGTGCATGACATGC AAGAGAGGGCGCAGAAGAACTTTGATGCGAGTAGAGATAGGTCATTGCCGGTGTTTGGTGTTGGAGTGGTGTTTATTGATGAGAGTGCCATTTTGTCGAT TCCTTCTGGTGAAATGGAGGAGGCAGTTGAGGTTATTAGTTCGGTCGTGTCAAGCTTAGCCCCGCCAACGAAAGAGTTGCATATTGTTCCTGTTGAAAAT GTTTACTCGTCAGATTCTAGTGATGGAAAGGAGAAGCTTATTAAACTAGTGGGTTCGGTTAGTGATCCAACAGGAAGGGAGGATATGTTGCTTTATTTGC GGATGTTGGCCCTGCAAAAGGTTTGATTCTGGATACCATGCTCTAATCAGTCAGAAGATTACAGACTTGAAATTTGAAAGTGAGTTTGTTTGAAATGCTT TGTCTTTGTCCAGGTTGCTTCTGAGTTTGGGTATAACAGACTTGTTCTAGGATCATGCGTTTCAAGGATTGCTTCCCATGTGATTTCTGCCACTGTGAAG GGTCAAGGATATTCATTACCTGCAGATATACAATATGTTGATGCTAGATGGGAAATTCCCGTTGTGCTTCCTCTGCGTGATTGTTTTGCCCAAGAGATTA ACATGTTTTGCCACCTTGACGGTCTAAAGACTTTTCGGTTTTCTACAGTTCCTTGCTCTAGTATCAATAGCTTGGTCTCATCTTTCGTAGCGTTATTGCA GGTATAATTTGTTTTGCTTGTGCCATACCCTTTTTATAGATAGTGGGGACATATTTAATGATGGGTTTAAACGAAAGCATGTCGTGTGACCTGTTTAATG AGTGTTTTAATCCGAGCTGTTGTTTCTTATATATGCAGAGATGTGGTATGTTTTTATAAGTACATTCTGATGACTAACTTTATGTACAATAACTTATTAT GGCTGAAAAAATTCATTTGAAGAGCATTATTCCGCCAGAGAAAAGAAGTCTCTTCTATTGTGAGAGTAAGGTTGTATACATCTACCCTCCCCAGACCCCA TTAGGTGGGAGTCTTATGCTCCGGGCCACTCGGAAGAGCATTATTCTACTTCAGGCTCATGAAGCTTATTGATTGGATATGATTTTTTATATAATGTATG CCTGCTTGCTTGTGGAAGTTGATTTGCCGGATTACATATTCAACACAAAAGTTCAAGTATTCAATATTACGGCTTTGATAGAGTAACATGCTGATGTTGA TTAGTTTTCTCCTTTCTATTTTATTAAAGCCTAAATTTGTTATTTTAAACGTAATTGTAAAGTCATTAATTGAATTCCAGTTTTACAGGAAGAAAATCCA TCTCGAGAGAGCACCATTGTAAGAACAGCTGGGAAACTTATTCCCTTCCAATTCAATAGGATTCCCGAGATCGTTGATGGTAAGGTTCCATTGGCAACTC GAAGACGCCAAAAGAGATATAATCTCAAACCCAATGATTCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAATAGCCCACTTGACAAGTCTGAAATTGT TGATGCAAGCAATGTTGATAGCAGTAGAAGCAGTGACATTTTTTACAGTGCCTGCTGCTCAAGTTGTCATTTTCAGATACTTCCAAGCGATTCCATATCC ATGGAGCAATTTTATAAGGATTTACCTCAACCAGTGCTTTCCCGAGCAAAGCAAACCAACAATGGCAATTTGAGTCTGCTCAGGTGAGTGTTTGTTTTGC TGATCAATTTATTGCATTTCAAATTTTGTAATAATCCAGACTAAGTGCCCACGTGCGTGACCTTCGTTTTTTTCATTTTTTGGTAAGGGAATAACTTTAT TAAGAAGAGAGAATTACAAGGAGAGAGGGTGATAAGGAATATAAACAAAGAAACAAAACATAAAAGAAATATGGAAAAATAGAAACTGAATGTAACAAAG CTTGTCAATCCCTCAACGTTTCTATTAGAGACGCATGAAAAAGGCCACAAGTTTTGCACCAAATAAACGCAAACAGCTTAATCTTTTCCAACCAAATGAT GAGGAGAAAAAACTTCCTTCCCAGAGTTCTGCTCTGACCAAATGCACACCATATTTGTAGCTTAACACAATGCCACAAAAGTTAAGCCAAGTATTGCACC AAATTGGTTGGGTTATGTTCAATTTATTTTGACTCTGGTTATGTTCAATTTATTTTACATACCAATGTTCTTGTTTTCAGGGAACAAATCCAAGATTGC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_62581; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_188050
| Blastp | Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.33% of identity |
|---|---|
| Blastx | Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 54.98% of identity |
| Eggnog | Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation (By similarity)(ENOG410YGU3) |
| Kegg | Link to kegg annotations (AT4G35910) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444040.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |