Id Trinity | FTRINITY_DN57365_c0_g1_i10 |
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Name Transcript | Ll_transcript_168559 |
Sequence | ATCGATTGAATGTATATAAGCTCAACCCAAACTTAATTTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAA AGTGAATAAAAACCTTAAAACATTTTATTATTATATATATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAAC CAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTTTATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCT TTCTGGGTATTCACCAATTCCACGTTTTTTTGATTTATTTCTTGTCTTCTTCGTAATCATAGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGA CAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAATGTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATC ATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCCGAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTT CTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTGACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCA TTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTTCACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAA GTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCTTGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCT ATTATTGTTGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTT ACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATG TGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCC ATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGAAATCTGGTCCTAATGGAACACAATATCGCCTAATACTAACCAAGACCCTTGAGTGGACTTTGA ATTGGTGCATCCTGCAAAGCATGTTTGATCGGTATCCCTGATCTTGTCTTGTGTGTCTACTCATCCACTGCGACATCCTCATATGCTCTTTACTGCCCAA CCGAAAATTCCATAAAGCATTGCTGGTTTTATTCCATTTAATAGTTTTTAATCTTATATTTTTTTTTATTTGAATGCATGTATGTGGTGGTTTATTTAGT TAAATTGTATGATATTGTTCATTATACTATACTGTTTCAATGATGGGTTTCTTCTTTGAACACACTTTCTTCGCAGAAACTTCTGTGTCAGAATGGATTT TGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTATAGTCATATTCATGCTGGTATATCTC TTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGG TGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCACTGCAAAATT CATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCACATATTTGGTCGGAACCTGCTG TGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATCACAGATGAGATTCTCGTGTTAGACCCTGAAAGAGCAATGTCTATGGTAG TTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTGTAAATGTCCGAATGGAGTTTGAAACCTTATTCCAATATACTGGGATGAT GTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTGCAGTTCATTGCAGATTTT ACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCTCCCCGCACAATGCTCCTC ACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGCTCAAGGTAAACAATTTTT GCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATGTGGAAAGGTAGTCCCAATATGGAA AGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGTGGCTAATTGAAGCCAATC AAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAATGATCCATTTGATGTTAA TGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAGTATCATGATGATAATCGAGCTGCT TCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACACTACCAGGAGCCATTGGT GGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATATAATAACTACTATGATAA ATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCTAGAACAGCATTCACAAATGACTTA GAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTACAAGCTTTTGAATGATGC CTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTGTAAATAGACTCATTGACT GTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGTTTTCTAATTCTTAAA BLAST |
Tissue | flowers |
Gene name | LI_gene_68094; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_168559
Blastp | Autophagy-related protein 9 from Arabidopsis with 60.17% of identity |
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Blastx | Autophagy-related protein 9 from Arabidopsis with 60.24% of identity |
Eggnog | Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE) |
Kegg | Link to kegg annotations (AT2G31260) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019434383.1) |
Pfam | Autophagy protein Apg9 (PF04109.15) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |