| Id Trinity | FTRINITY_DN57862_c1_g3_i3 |
|---|---|
| Name Transcript | Ll_transcript_57164 |
| Sequence | GGCAACAACTTTGATGGGAAAGGAGCATGGTTTGAACCTGAAGGAGACTGAGCTTTGCCTTGGTTTGCCTGGTGCTGGTGGTGGCTCTGAGGTGGAAACT CCAAGGGCCAATGGGAAGAGAGGGTTCTCTGAAACTATTGATCTGAAGCTTAATCTTCCTTCCAGGGAAGATCTGAATGAGAATATGAAGAATGACTCCA AGGACAAAACCCTCCTTAAGGACCCTGTCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACGTGATGGCACA AAAGGTTAACACTGAAGATGGCACTGAGAAGACAAGTTGTGGTGCATTTGTCAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGACCTGACA GTGTACAAATGCTACCAAGAATTAGCTGATGCTTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAAGTACTAAAATAATTAACTTCATATATTTTCAT TCTATATTGCCCTCAATTAAAACCTCCTTTAATTACCACAACTTTGACCTAATAACGTTAACTATATTAGGGTATTTTCATGAACAATGGTGTATATAAT AAACTAAATTTTACTATATAAGTTTTTCCTTATGTTGATTTTTAACTAATATCATAGCACCAAAGATAAAACAATAACCAAGATCTAATTTTAATATGTA GGATGAATTGCATGAATCAAAAGATTATAATATTGAAGATAATCAAATATAAAATACGAGTATTAGTGATTATTATATATATGTAAATTTAAATCCTTGA TGCATGACGATGCTATATATGTATGAGCTGGATTAATCTTCTTGGGATTGTTACATTCTAGATACTGTATAATTTGTGGGTTACTGCTTGTGATTAACTA TTATAATGAGTAGAATATTAAATTAGTTTTTATTTGATTTATGTTTTGTAATACAAATACTATAGGTGACTATGGGACCCAAGGAATGATAGACTTCATG AATGAAAGTAAGTTGATGGATCTTCTGAACAGCTCTGAATATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGG AGATGTTTGTTGGTTCATGCAAGCGTCTGCGAATAATGAAGGGGTCAGAAGCAATTGGGCTTGCCCCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTG AAGCTGGCAAAATACATGTTCTATATAAGAGTTCCGTATCAAAGTGGACCTATATAAAGATATATGAAGCACTTTTGTGATGTTGTTAGTTTGAATGTGT CTGTGTTTTTTTAATTGTTGGTATATAGATTGATCAGCTTTAATTTTAAGGAGACTATGGGGGCTTTTGTAATGGACAAGAAGCAATAAACATAACCTAT ATACTAGTCTGGCTTGTTTAATATTATGTGATCCTTCCTTGTTGTCATGCTTGTTGTGTGCTTAATACTTTGTATTTTAATGCATACTTTTATTCCGTTA AGAGATTCTTCATATATCATTGTATTTTATTTTAATGTGTTTTGGTTAAATTGTATACTGCTGAATTATTAATGTCTCAGCTGGATGTGGAAGGTATTTA ATTTTTATATGGTTCACAAGTGAGGTAGGGGAACAAGCCCATGTGCATGTTGATTCAGTATCGTTGATGTCCATTAATTTTATAGTACTTGTCTATTACT TCTGTTACTTTGTAGAATCAAATGCGTATTAACTGGGTGAATGTAGGGTTTTTGAGTGCATGTGGTTGGATATTAATTTGATGACTGTAATTTCAATTTA GAGTATCAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_72244; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_57164
| Blastp | Auxin-responsive protein IAA14 from Arabidopsis with 65.61% of identity |
|---|---|
| Blastx | Auxin-responsive protein IAA14 from Arabidopsis with 65.61% of identity |
| Eggnog | Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression(ENOG410YEC3) |
| Kegg | Link to kegg annotations (AT4G14550) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428860.1) |
| Pfam | AUX/IAA family (PF02309.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |