Ll_transcript_50475

Id TrinityFTRINITY_DN58840_c0_g1_i4
Name TranscriptLl_transcript_50475
SequenceCCCGTACATTATCTCACTCTTTGCACTTCCAAATTTCTCATCGATCCCCAACTAACGTCAAAATATATGATTCACCCCTAAGTTTACAATATTTATGAAT GACCCCAACAATTATTTTATTAACACCGTTCATTATTTATAACCACTACAATCTTACGCATTTCAAAGTACAAATTTGACCTTTCGTTTTCTGGATCTAG GGTTTCACTTCTGAGACCGTCGCTCCTCAATTTCATCATCATCAATCTCCTTAATCGCCATCATCAAACCCTAAATCACAACCAAAATTACTCTGAATCC AAGACCAAAACGAATCAATCGCTAAATTACTGTTTTGTGTTCTGACCGAATTGAGGGTTTGATTTGATTATCCATTCACACGCAATAAGTGTAGGGTTTT TGAATTGATTATTTTTTTCCATCTCCACCGTTACCATCAATTACTGATCTAAAATATTCTCAGAAAAAAATATGGCTTAATATTTTTTTCTTTTCATATT ATTATTATTATTATATTTTGACTTTTGTAACCCGTTGCTGATAAAATTGGGATTATGATGATGACGATGATGATGATGAATCTATAAAGCAAAGGAATTG AGAATTTTGATGAAAGCCCTAAATGAGACTTTGACTTGAGTTTGTGATTTGAAGGAACAAAAAAAGGGGGGAAATGTATAAATCAGTGGTGTACCAAGGT GAGATGGTGTTGGGTGAGGTAGAGATATACCCAGATGAGAAGAACAAGAAGAGCATGATGATGATGAATTTGAAGGAAATCAGAATAACAAACTTCTCAA AACAAAGTGAAAGGTGTCCACCACTTGCAGTGCTTCACACCATTACCTCATCATGTGGTGTTTGCTTCAAAATGGAGTCAAAGCTCACACAACAACAGGA CCTGCTATTTCACTTGCACTCCACATGTATCAGGGAGAATAAGACTGCAGTAGTGCCGCTGTACGGTGAAGAAATACATTTGGTTGCAATGTATTCTCGG ATTAATGATAGACCATGTTTCTGGGGATTTATTGTTGCACCAGGACTTTATGATTCATGCCTTGTGATGTTAAATCTTAGATGTTTGGGTATAGTGTTCG ATCTGGATGAAACTCTTATTGTTGCAAATACAATGCGCTCCTTTGAGGATAGAATTGAGGCTCTCCAGAGAAAAATAAACTCCGAGATAGATCCACAACG AATTTCTGGTATGCAAGCTGAGATCAGGCGTTACCTAGAAGACAAAAGTATATTGAAGCAATATGCTGAAAATGATCAAGTTGTTGATAATGGAAAAGTT ATAAAAGTTCAGTCGGAGGTCGTTCCAGCATTGTCTGGTAGCCATCAGCCAATAGTCCGACCACTGATACGGTTACAGGAAAAGAACATTATTTTGACAC GCATCAACCCACTGATTCGTGATACAAGTGTTCTTGTGAGGTTGAGACCTGCTTGGGAAGATCTTCGCAGCTACCTGACTGCGAGAGGCCGCAAGCGTTT TGAGGTTTTTGTTTGCACAATGGCCGAAAGGGACTATGCACTAGAAATGTGGAGACTTCTTGATCCAGATTTGAATCTGATAAGTTCTAAAGAACTATTA GATCGTATTGTATGTGTGAAGTCTGGTTTGAAGAAATCACTGTTCAATGTATTCCAAGATGGCTCATGCCATCCAAAGATGGCTTTGGTAATTGATGATC GCTTGAAAGTGTGGGATGAGAAAGACCAGCCAAGGGTGCATGTAGTCCCTGCATTTGCTCCATACTATGCTCCTCAAGCCGAAGCTAGCAATGCTATCCC TATCTTGTGTGTTGCAAGAAATGTCGCTTGCAATGTTAGGGGTGGCTTTTTCAAGTAAGAGCTAATCCTTAATCCTTTTAAAAGTTATATTGTTAAGAGA TAATCCTTAATCCTTTTAAAAGTTATCTTCAATAAATATTTGTACAACTGAAAAAATGGTGGAAAATGCAGACACACTTAGTTCCCTTTACAAATCGGGA CAAACTGTTTTTGATAGCTAGAACTTCATTTTTGAGCTCTTTACTTTTTCCAATCAGTAAAAAACTAACATCATTCTTGGACTTGATTATGACCTTTGAT TTGGTGGCAGAGACTTCGATGATGGTCTTTTACAAAAGATTCCTCTGATTGCCTATGAAGATGATATCAATGATATACCTTCTCCTCCTGATGTGAGCAA TTATCTAGTTTCAGAGGATGATGCATCTGCTTCCAATGGAAATATAGATTCACTTCAATTTGATGGCATGGCAGATGCTGAAGTAGAAAGAAGGTTAAAG GAAGCATTATTAGCTGCTTCAACTATCCCTCCGATTACTGCTAATCTGGATCCCAGGCTAGCTTCTTCTCTTCAATACACGACGGCGTCTTCTTCTAGTA CAGTTCCACCCCCAACAGTACAAGCACCTGTGATGCAAATTACCAATATACAGTTCCCTCAATCTGCTACTCTAGTTAAGCCAATGAACCAAGTTGCCCC AGAACAGAGCTTGCATAGTTCTCCTGCTAGAGAAGAGGGTGAAGTACCTGAATCAGAATTAGACCCAGACACAAGGCGCAGGCTTCTCATATTGCAGCAT GGACAAGATATTAGGGAGAACACATCAAGTGAACCTCCATTTCCTGTCAGACTTCCCGTACAAGTTTCACCTCCACATATCCCATCACATGCGGGATGGT TTCCTGTAAAAGAGGAAAGGGGTCCACAGCAACTAAATCGGGTAGCACCGAAAGAATTCCCTGTGGAGTCTGAACCGTTGCATATTGAGAAGAAGTGGCC TCGCCATCCATCCTTTTTCTCCAATGTTGACAATCCTATGTCATCTGATAGAATTCTCCATGAGAACCACCAAAGATTGCCAAAGGAGGTTTATCAAAGG GATGATCGCTCGAGATTAAACCATACACACTCTAGCTATCATTCTTTCGCCGGTGATGACATTCCCTTGGGTAGCACTTCTTCCAGCAACTGGGATCTTG ACTCTGAATCTGGACATCCTTTATTTTATGCAGATTCTCCAGCTGGCGTATTACGTGAAATTGCACTGAAGTGTGGAACTAGGGTGGAGTTCTTGTCATC TTTAGTTGCTAGCACGGAACTGCAATTCTCTATCGAGGCATGGTTTGCGGGAAAGAAAATTGGGGAAGGAATTGGTAGAACAAGAAAGGAAGCCCAATAT AAGGCTGCCGAGGATTCTATTAAACAATTAGCTGATATATATATGTCCCATACAAAGGCTGATTCTGGTTCCACTTATGGTGATGCAACTGCGTTTCCTG GTGTGGAGGACAATGGTTTTATGAGTGGTGTTAATTCTCTTGGTAATCAGCTATTGCCTAAAGAAGAGTTGGACTCATTTTCAACTGCATCGGATCCATT AAGGGGGCTAGATCCTAGATTTGAAGTCAAGAGGTCAATGGGTTCAATTTCTGCCCTCAAAGAATTGTGCATGATGGAGGGTCTAGGTGTCAGTTTTCAC TCTCCACCTGCTCCTGTGTCAACAAATTTTGTACAGAAAGATGAAGTACATGCACAGGTTTGTTGATATACTACTCCAAACAAATGGAGTTAAAATTATT AGTGTCTTTAAATTTCTGAAGGGTTTATGCTTCTCTCTCCCCTTCTATACTAGTTTCTCATTTATGATTTTTAATTTGTATTTATTGTAGGCACAGAGCT TACATTTTTCTTCTTTTCTATTTTCACTGCATATTTGGCCCATAGGGTGGCGGTTAGCGAGTTAAATGTTCCCTAGATGGAATTCCAGAACATTCTTAAG TTGCCTTCACTTTTATATATACGGCTTACAATTATTTTTGTTTTGAGAATTGGAGGTGAATAGTTACTGGTATACTGACATATAATTGAAATTCACTTTT ACTTTCTCTAGTGTGATAGTTTGGCAAAAACATCATCCTGTAGTTGTGTAGGGCTTATAAGAAGTGAAGGAAGCCTTCTTTCTTTTCTATAAATACATTT TTAGGCTTAAATATATTTTTTTGTCCCAGAAAAGTATACCGAATTTTGGTTTTATCCCATACAATTTAATTTTTTTGGGTTTTGGTTCTTATATCTTCCC AAAATTTTGATTTTATTCTCCAATGATGATGTGGCTAACACCAACATGTGACACATGTCATACTATCTGATGGCGTGAACAATTGTGGTTTTGACATATC ATTGGCAAGGACAAGAAACAAAATGTTCAACATTACCTATATTGTTGACAGTAAAAAATTATTTAAGCCTACATTTTAGGGTCTTGTTTTTCACCCACGT TAATGTGTTCCTTTTTTTAGTAAAAAGATCTAAAGTTCTCTAATGATTTAGGTCGAAATAGATGGTCATGTGTTTGGTAAAGGGATTGGGTTAACATGGA ATGAGGCTAAAACGCAGGCTGCCGATAAAGCACTTGGAAGTCTAAGGACAATGCTTGGTGAAGGCACTCAGAAGCGGCAGGGTTCTCCTCTCAGGTCATG GCGAGGATTTTCGAA BLAST
Tissueflowers
Gene nameLI_gene_80538; 
Additional informationdetails; 

Expression of Ll_transcript_50475

Labels

FPAB abscising flower pedicels
FPNAB    non-abscising flower pedicels
LF1 lower flowers stage 1
LF2 lower flowers stage 2
LF3 lower flowers stage 3
LF4 lower flowers stage 4
UF1 upper flowers stage 1
UF2 upper flowers stage 2
UF3 upper flowers stage 3
UF4 upper flowers stage 4

Annotations of Ll_transcript_50475
BlastpRNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 47.95% of identity
BlastxRNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 70.62% of identity
EggnogCTD (Carboxy-terminal domain, RNA polymerase II, polypeptide A)(COG5190)
KeggLink to kegg annotations (AT4G21670)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019425587.1)
PfamDouble-stranded RNA binding motif (PF00035.25)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;