Ll_transcript_365957

• Id Trinity: TRINITY_DN46382_c0_g1_i4
• Name Transcript: Ll_transcript_365957
• Sequence: GCCAACACCAACCACTGCCCAATGGCCCCACTCTTCACCACTCCTACTCTTCTTCACTTCACTCTACCCTTTGATATTTCGTGTAAATGTCACTTTAAAT AAAATAAGACCACACACAAACAAACCTTATAATAATAGAAACTGACCAAATCAATCTTCTTCTCTACACTTTCTTAATCGAACCTTCTCTTCGTTTCTCA CACCACAACAAGTGAATTAACTGTTAGGAGATGTAGCTTGTGGGGTTTAAGCTATAAGCGGTATTAATTGGACTTCTGCTGAAATGGGTTTGGTTTTGTT ATTGGGCTGATTGACACATGGCACATAAAGCAATGACATCTTCTCATGGTAACGCACACTCGGAAGGTGCGGAGATGGAACAGATAATCACTGAATTTTT CGCTAAAAGTATTCACATAATACTCGAATCCAGAGCACTCTATGCGTCCTCACGTAATTCCTTTGGCGATCAAGTTGTGTCATCTCCATCTTCGTCGTCT TCATCCTCATCCAGCGTGCGCCCGAGGGATAAGTGGTTCAATTTGGCACTCCGGGAATGCCCTGCAGCATTGGAGAACATGGACCTGTGGCGCCAAAGTA ATCTTGAGCCGATTGTGATTGATGTGGTTTTGGTGCAGAGGCCTGTGAACTGGGACCCTACGAGTTGCCCCCTGAAAAAGGTTCTTCCTAGGAGTTCTTC AATGAAGGAAAGATACCCATTTTCCTGGAATAGTGATCAAGAAGAATTGGGAATTGAAACAAAGAGTGATAAGATTATAGAGAGATGGGTGTTGCAGTAT GAGAGTGGAAAAACAAGAGATTCTAATTCCAACAGTAGGAGGTCAAGCAACATTTCTTTGCATACTTTGTATAAGAAATCTACTTTACTTTTGAGGTCTT TGTATTCCACTGTTAGACTTTTACCTGCCCATAAAACTTTCAGAGAGCTTAATTCATCTGCGCAGATTCATCCATTCACCCTTGTGCACCGCATATCTTC TTTCATTGAGCCCTTCACCCGTAGAGAAGAGGCAGAAATGCTGAAATTTGGGTTCACCCCTGTGGATACTGCGTCCGGTAGGCTCTGCCTTTCAGTGATG TATTTACCATCAGCCTCAGAAGTGAGCTCTGAACCGACAACTCCTATGTCCCCACAAGTTATAACTGACTATGTCGGGAGTCCTTTGGCTGATCCTTTGA GGAGATATCCATTGATTCCGGTGACAGGATTACCATCATATGGGTCTCCATCGTCATTGCCCTTTTCAAGGCGACATAGTTGGAGTTATGACCATTTTAG AGCTTCTTCTCCTTCCATTGCTTGTTCGCCTTCACCTACATATTCAGAATCACACACATCAGTGTCTATTGCAAATTATCGGCATTTTCCACCTGCAAGT TTGCCTCCTCAACCAACTGAGTTATCATTGATTCAGAAGAGGAATACAGGTTTTGATGATCGTTATCCCCATCCATCACACTCAATAGACAATTTTGGGT CATTACCAACTAAAACAATTTTACGAACTGAAAGTGCTCCAGTCAGGATACCTGCTTCTGAAGTTACTAATTCCCCTGATACAAATATGAGCATGCAAAC AGGTGCAACAGCTGAGAAGTTGTTTTCTCTTGGAAAAGATGAGCCGCGAAAATATTCTGGAGTGAAGATATCAGCTAACAGCTCGCCGCATATTTCATTT TCCAGAAGCTCCAGTAGATCTTATCAGGATGATTTTGATGATTCTGATTTTACTTGTCCTTTTAATGAAGATGATTTGACAGATCCAGAAACAAGAGCGG AATCTTTTGATCATGGACATATGGCTGATGCGCTCGAAGCCGGAGGATTCTTTCCTATCAGAAAGTCCCATGATGCTGCTGTTGGTACGCTTGTACATTT GCTGAAGAAAGCACCACCTCTCCGTCAAGATCTCTCCACTTCCGAGCACTTGTCACAAGGCGCACACTCTGAAATCTGGAACAACAACATTAAAGAGCCC AACCAGACCCCAGATGCTCCAATGCCAGTGAGCATGATGTCTTCAGGTCTCATAGCCACTAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATAGTT ACAGAGAGATGAAAAACTTATTGCTTACTGGAGGTAGGAAGAACCAGATATAATATACTTTTGCTTCTGTGAATGAGGTTCATGTTGATGTTAAATCAGC AAAATGCATGTACAGCTTTTTTACTTGATAACTCTTTCTTTGTATTGAAAATATGTGTAAATATGATGATCAAGCAAACCTTAGTCCGACTAGTCCGACT AGGTGGGGTCAACTGCATAAATTGAGCCGATATGAGCTTTTGGCACACTACAACTTTATGTTTGTAAAATACATGAAGCTGGTGATCAAATCTGAGCCAT TTGGCACACTACAATCTTATATTGTGTAAAATACATGAAACTGTATAATAACGACCACCCTTTCTCTTTCAAAA
• Tissue: pods
• Gene name: LI_gene_144248;
• Additional information: details;

Expression of Ll_transcript_365957

FPKM

• PAB: 6.9
• PNAB: 7.3
• PS1: 14.3
• PS2: 10.4
• PS3: 15.5
• PW1: 7.8
• PW2: 11.7
• PW3: 17

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_365957

• Blastp: Autophagy-related protein 13b from Arabidopsis with 52.65% of identity
• Blastx: Autophagy-related protein 13b from Arabidopsis with 51.04% of identity
• Eggnog: Activates the ATG1 kinase in a nutritional condition dependent manner through the TOR pathway, leading to autophagy. Also invoved in cytoplasm to vacuole transport (Cvt) and more specifically in Cvt vesicle formation. Seems to play a role in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage during stationary phase (By similarity)(ENOG410Y4BP)
• Kegg: Link to kegg annotations (AT3G18770)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462868.1)
• Pfam: Autophagy-related protein 13 (PF10033.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;