| Id Trinity | TRINITY_DN46626_c5_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_434666 |
| Sequence | AGGGTCAAGGATATTCATTACCTGCAGATATACAATATGTTGATGCTAGATGGGAAATTCCCGTTGTGCTTCCTCTGCGTGATTGTTTTGCCCAAGAGAT TAACATGTTTTGCCACCTTGCCGGGTTTGTAGTTTTCTACATATGCAATAAAATAATTAAGTTAAAAATGTTTCTTTGTTTCAAGTTTTGTAAAGTTTCA CATAATTTTACATGCATTGCCAGGCTTGTGTTACCAAGCTGAGTTATGTGACTCATACTGAATGGATGTCTCTGATCTCTTTGGCAGGGCAGTCTAAAGA CTTTTCGGTTTTCTACAGTTCCTTGCTCTAGTATCAATAGCTTGGTCTCATCTTTCGTAGCGTTATTGCAGGTATAATTTGTTTTGCTTGTGCCATACCC TTTTTATAGATAGTGGGGACATATTTAATGATGGGTTTAAACGAAAGCATGTCGTGTGACCTGTTTAATGAGTGTTTTAATCCGAGCTGTTGTTTCTTAT ATATGCAGAGATGTGGTATGTTTTTATAAGTACATTCTGATGACTAACTTTATGTACAATAACTTATTATGGCTGAAAAAATTCATTTGAAGAGCATTAT TCCGCCAGAGAAAAGAAGTCTCTTCTATTGTGAGAGTAAGGTTGTATACATCTACCCTCCCCAGACCCCATTAGGTGGGAGTCTTATGCTCCGGGCCACT CGGAAGAGCATTATTCTACTTCAGGCTCATGAAGCTTATTGATTGGATATGATTTTTTATATAATGTATGCCTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_145990; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_434666
| Blastp | - |
|---|---|
| Blastx | Cytoplasmic tRNA 2-thiolation protein 2 from Oryza sativa with 79.49% of identity |
| Eggnog | Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation (By similarity)(ENOG410YGU3) |
| Kegg | Link to kegg annotations (4352669) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444040.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |