Ll_transcript_316427

• Id Trinity: TRINITY_DN46737_c0_g1_i6
• Name Transcript: Ll_transcript_316427
• Sequence: ACATCTAATTCACTTGTTCCTGGTAGCAATAGTTATGTTACGTATCTGATCACGACGAGGACGAATGTTTCCGAATTTGGAGGATCTGAATTTAGTGTTC GGAGGAGGTTTCGTGATGTCGTCACACTTTCGGATCGTTTGGCGGAGTCGTACCGAGGGTTCTTCATTCCGCCGAGGCCGGATAAGAGCATAGTGGAGAG CCAGGTTATGCAGAAGCAGGAGTTCGTGGAGCAGAGGAGGTTGGCGCTGGAGAAGTATCTCCGGAGGCTTGCCACGCATCCGGTGATCAGCAAGAGTGAT GAGTTTAGAGTTTTTCTGCAGGTTCAGGGGAAGCTCCCGCTGCCAGCCACGACTGATGTGGCATCGAGAGTTTTGGATGGCGCAGCGAAGCTCCCGAAGC AGTTGTTGGGGGACAGTGTGATTGCACCCTATGAGGTTGTGCAGCCGGCAAAGGGGGGAATGGATTTGATGAGGCTGTTTAAGGAATTGAAGCAGTCTGT GGTGAATGATTGGGGAGGTTCTAAGCCGGCGGTTGTGGAGGAAGATAAGGAGTTCTTGCAAAAGAAGGAAAGCATTGAAGAGATTGAGCAGAACATCAAT AATGCATCTCAACAGGCCGAATCACTTGTCAAAGCCCAGCAAGATATGGGAGAAACCATGGGTGAATTAGGTTTGGCATTTATTAAGTTGACAAAATTTG AAAATGAGCAGTCTGTCTTGAATTCTCAGAGGGTTAGAGCTGCTGACATGAAAGGTGTAGCAACAGCTGCTGTCAGAGCTAGCAGATTATTTCGAGAACT AAATGCGCAAACTGTGAAGCATTTGGATACACTCCACGAATATCTTGGACTTATGTTGGCTGTCCATGGCGCATTCTCAGACCGCACAAGTGCGCTATTG ACAGTGCAGACCCTTCTATCAGAACTATCTTCTTTGCAGTCACGAGCGGAAAAACTTGAAGCAGCATCTTCTAAAATTTTTGGGGGTGACAAATCTAGGA TCCGTAAATTAGAGGAGCTAAAAGAAACCATAAAAGTCACTGAAGATGCTAAAAATGTTGCAATTAGAGAATATGAGCGGATCAAGGAAAACAATAGGAG TGAACTTGAAAGGCTTGATAGAGAGAGACATGATGACTTCTTAAACATGTTGAAAGGATTCGTAGTTAATCAGATCAATCTCTCATGGGATTTCTGTTAT CATTACACTTATGCCCTCTAAGGGTAAGATTGAAATTATGTCGACCTGCCATAAAGGATGTAACTTCTGAGGCAAGAATGGTACCAGGTGTAATTAAGGC GAGCCTAAAGGGAAGTTAATTTGATTTCCCCTTAGCATAAATAACAACTGAAAAGCTGCATATTTCAGTCATGTTTGGTTAATTTAGCTCCTCATCTTCC CGTGTTGCTTCTTTGTTGATGCTATCTTTAGTTACATTCATCCGTTGCTTTGTGCACAAGTAATGCCCGTTGTGAATTAATAGGTGGGGTATGCTGAGAA AATAGCAAATGTCTGGACAAATGTTGTTGAAGAGACCCGTGGATATGTGAATGAAAGCACTTGATTACGGTGGCGGTAAATTTAAAATTTTATCTTTATT CATTAACGTGCCTCCCTCAGAATGCATGTTTGTAGTGATGACAATAAACTTGATGAAGTGCGATGTTGGTTTCTAGGTTCTCTCTCACACTTGGTGGTTT CTTACATATCATTAAAACTCATACTTATGTTGTAAATTATTTGCTCGATGTTTTACTCCTCCGGGTTTTGAAGATTTTGTTTCTGTTTGCTTTTCCTTTT TCACTTGTCTAACTACTGATCATATACTTGACCCAACAAAAAATACCCGTCATATGAAGTTGTGTAACCGAGTTTCAACTATTTTCTCCCATATCAAAAT TTACTTTGTAAAATAGTTTTGAACAACTTGCTCACAAAAACCGAAAAAGGAAATTATGATAAACCTCTATTGTATCAAATTGAGAATGTTGTGTACTAAA AAAACCTCAGTGTATCACAAAAATTGAGAATGTTTTACGCATCTTTTTTAATAAGTTGTGCTCAATAAACGTCACCCATTTCCCAGGATCCTCTACCCAG CCAGGAATTTAATTTTAGGCAGTAGGGGTAAGTTTAATGTGGGTGAGTAGTTGTGTTGGAAATTCGAGTAGATGAGGTATAGTCCGATTCTATAGATTCA TGGGAAATGCCACTGACTTTTATGTAGCTGGCCAAGACACAAGGTAAAAGGAG
• Tissue: pods
• Gene name: LI_gene_146814;
• Additional information: details;

Expression of Ll_transcript_316427

FPKM

• PAB: 1.4
• PNAB: 0.6
• PS1: 0.3
• PS2: 0.4
• PS3: 0
• PW1: 0
• PW2: 0.3
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_316427

• Blastp: Sorting nexin 2A from Arabidopsis with 79.75% of identity
• Blastx: Sorting nexin 2A from Arabidopsis with 79.75% of identity
• Eggnog: sorting nexin(COG5391)
• Kegg: Link to kegg annotations (AT5G58440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456404.1)
• Pfam: PX domain (PF00787.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;