| Id Trinity | TRINITY_DN49694_c1_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_415400 |
| Sequence | AGGTGAGTTAGTAGAAGATGGGGTTCCAGTTTGTGAAGGTGGCAGTGGAAGCAGTGAAGAATCTGATGTTGGAAGTGATCTTTATAAGAATGAGGATGAC AAACAAAGGCTTGCGAAAATGACTGAACTTGAAAGAGAAATGATTTTGTCTGATAGAGCAGCTAAGAAAGGTGAAAAGGAATTTAAAGAGAAACTGAAAA TGAAGAGGGACAATAACAACAACAACAATGTAAATCAATCACATCATCCTTCTTCGTCTTCCAAGGTTCGTTCATCTACGAGACATGCCGAGAAAACAGC AGCTAAGGGAGATGTCCTAAGCGAATTGCGCGCCAAAAGGATGAAACAGCAGGTCCTAGACACTTGTGGTAAATCGGTATGAAGTGCTTCGAAACCAAAC TCAACAAACAAGGGAGTGAAGCCAAAACCTACTAGTCCAAGTAGTTCTAGTCAGAGTGAGAGTGGTGTGAGGTCAGATAGTGAAAGAGAATCATCTGATG ATGGTGGCTTGGCTGACAGTGATGACGATAAGAACATGGTCGAATCAAACGTTCCAACATTTGAGGATATAAAGGAAATCACCATTAGGAGGTCAAGGCT TGTGAAATGGTTGAATGAGCCATTTTTTGAGGACTTAATTGTTGGTTGTTTTGTAAGAATTGGAATTGGAAGGTCAGAAAGTGGACCTGTATATAGGCTT TGCATGGTTCAGAATGTTGATGCAGGTGACCCAAATAAACCTTACAAGGTAGAAAATAGAGTCACTCATAAGTATCTGATTTGCATATGGGGTAGTGAAA ACTCGGCTAAAAAGTTTCAAGTGGCTGTGATCTCAGATTCTACACCTTTAGAGAAAGAGTACAGACAATTGCTTAGGGAAGTTGAGAGAAGTTGCAGCCA AATGCCTAGTAAGTTGAATGTATTGGAAAAGAGAGAGGCTATAAGAAGAACCAACACATACATTTACTCAGCTGCCACTGTGAAGCAAATGCTAGAGGAG AAAAAATCTGCTTCATCTAGGCCACTCAACATTGCGGTAGAGAAGGATCGTTTGAAGAACCAATTGGAAATAGCAAAAAGCAAGAATGATGGAGCTGAGA TGGATAGGATCTTAGCGAAGCTTCAGGATTTGGAAGTGTTACGCAAAGCGCGGGAGAATGATGCCAAGGCTATTAGGCTGACTGAGATGAACAGAAAGAA CAAGGTTGAGAACTTCAAAAACTTGTCTGAGCATAAGAATGTGAATGTAAATTTGAAAGCAGGAGAGGAAGGGTGTGATCCATTTTCAAGGAGGTGGACA AGGTCTAGGAATTACTACACTTCCGAGCCGGGGAAAGAGAATAAAGATGGTGAGAAAAATGAAGCTAAAGGAGAGAAGGATAAAACTGTTGGTGAAGCTA GTATGGGAGAAGAAAAACAAGTCACAACAAAGGTTAGCATCGAAGCCACAGAAGTGGCATTGCAAGATTCTGCTAATGAAGGGAAGTTAGGTGATACTAT TGCTCCTGCGGATCAAATAACAGAGTCACATATGCTGCATGATTTTGAATTGCCGATTTCGTTGGACGCACTTAAGAATTTCGGTGGACCACAAGGACTT AAAAATGGGTTTTTGGCAAGGAAACAAAAAATAGAAGCAACAGTTGGGTGCCAAGTTTCTGAGAATGATGGGAGTAGGCATGCTCTCACATTAACTATTA GTGATTATAAGAGAAGAAGAGGGCTTCTGTAGAGTTTAGAAATTGTCTGACCCTTGTGTAGTCTAGATATACTTTTGATGCTACAAAATGCTCTTGAAAT AGGAATTTTTTTTTTCTTGTACCATTTTATGTTCATCAGCTATGTGAGCCAAGCAATATTTTCAGCTGAATAAAGTAGTAGACATGGAATAAGAGGTGCT TAATCTTTCCCâBLAST |
| Tissue | pods |
| Gene name | LI_gene_171475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415400
| Blastp | Protein RTF1 homolog from Arabidopsis with 60.25% of identity |
|---|---|
| Blastx | Protein RTF1 homolog from Arabidopsis with 54.86% of identity |
| Eggnog | Rtf1, Paf1 RNA polymerase II complex component, homolog (S. cerevisiae)(COG5296) |
| Kegg | Link to kegg annotations (AT1G61040) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422536.1) |
| Pfam | Plus-3 domain (PF03126.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |