Id Trinity | TRINITY_DN51033_c0_g1_i13 |
---|---|
Name Transcript | Ll_transcript_528503 |
Sequence | GTACAATCTTTAGAAATTAAAATGGAACGGAAGAACATTTGGAATAGTGAGACTAATAACGATAATCTACACTCATGACAGAAGAGACAGACATCCCATC AAGTAATTGTTGGTGACCTGCTATGGTAAATAGTAATAATCTTTTTTGTTTCCCATTTTCCGGAGGAAATACTGTTCGACCTGAGAACATCTACGTATAC TTGTAACATTTCAGCGAATATTTTTTACATACATAAGACTCGAACCGTTAAATGGTAATGATTTGAGCTGGAGTATTGTTAATTATGATTATACTTATTT TGGAGTCATAAAAGTGAAAACTACAAACCCTCTTTTTCCACTTTTCATTTGATCAATTTCTCCATTCTGTTCCTGAAACCTCCTTAGGTCATGGAACAAC ATTCTCTTCCTCCACCGTCTCAACCACCAACTCGCCGTCTCAAAAGAGGAAGACCTCCAAAACCGAAGCAAAACGATCAAGAGAGTTCTCATGATGCACC AAAAAGGCCTAAATTAAAACGAAGTCGTTTTCAGCAAGGAACTTCAAGTGTTGCTCAACAAGCCTCTGATTTAACATTGATTGAGGCGATCAAAGGTAAT GACAAGCTTATTCCTCATGTCGTCAAACTTTGGGTTGAACGCTATGAAATGGAGCCAAAACCTGCGATGGATGAACTCTTGACGATGTTATTTCAGGCAT GCGGAGCCAAGGATTACAACAAAGGTGATCTCGTGGATGAGAATGATGTTGATGATGTTGTAGTTGCTCTGGTCAACTACGCTATAACTGGTGAACTTGA AGAATATCAAAATTCCAAAAAGGAGTTTAAAAAATTCAAAGAGAATCTTAAGTCATTCTGGCATAATTTGGTTTGTGAATGTCAACATGGCCCATTGTTT GATCAGGTTTTATTTGACAAGTGCATGGACTATATTACTGCACTATCATGCACCCCTCCAAGAGTTTACCGCCAGGTTGCTTCATTGATGGGTCTTCAGC TTGTCACATCATACATAGCTATTGCTAATGTGCTTGGTGGACAAAGAGAGACTACACGTAGACAATTGGATGCTGAAAAAAAGAAAAGAAACGAGAGACC TTCACTAGAGTCACTGAATAAGAGGTTTTCTGATACTCATGAGAACATAAGATTGTTGGAGGAGATGATGCGCAAAATATTTACTGGGTTATTTGTGCAT CGCTACAGAGACATTGACCCAACTATTAGAATGTCATGCATTGAGTCACTTGGTCTATGGGTTCTGTCATACCCATCACTTTTTCTGCAGGATTTGTATT TGAAATATCTTGGATGGGCATTGAATGACAGAAATGCTGGTGTTAGAAAGACTTCAATAAACGCACTGCAAAATATTTATGAACCAAATGATAATGTACC ATCCCTTGGTTTATTTACTGAAAGATTTTCTCGGCGGATGATTGAGCTTGCTGACGACATTGACGTTTCTGTAGCTGTTTGTGCCATAGGGCTTATTAAA CAACTACTAAGACATCAACTTATTTCTGAAGATGACTTGGCTCCTTTGTATGATTTGTTGATGGTTGATCCTCCGGAAATCAGGCTTGCCATTGGAGCAC TAGTTTATGATCACTTGATTGCTAAAAAATTTAATAGCTCCAAATCAGCACCAAGAGACAATTCTTCTGAAGTCCATCTTAAGAGAATGTTGCGACTTCT GGAGGAGCTCCCGCGTGATCCAATTTTGAGTATTTATGTGATTGATGATGTCTGGGACTACATGAAAGCTATGAAGGATTGGAAGTGCATTGTATCCATG CTTCTTGATGAAAACCCATTGATTGAGCTCTCGGATAGAGATGCATCAAACCTGGTGCAACTCCTGTGTGCATCTGTGAAAAAGGCTGTTGGAGAAAGTA TCATTCCTGCTACTGATGCTACTGATGACGGAAAACAATATCACAACAGAGCCCAAAAAGAAGCATATGAAAGTAATAAACAGGATATAACTGTTGCCTT GATGAAGAGTTACCCATTACTCTTGCGGAAGTTCATTTCAGATAAAGAAAAGGTGTCATCACTGGTTGAGATTATTTTGTACATGAACCTTGAGCTCTAT TCTTTGAAGAGACAGGAGCAGAGTTTCAAAAATATCCTCCAGCTCATTAAAGAAGCATTTTTTAAGCATGGTGACAAGGACACCCTGAGAGCTTGTGTGA AGGCAATTGATTTTTGTTGTGAAGAAAGTCAAGGGGAGTTGCAAGATCTTGCCTGTAATAAATTAAAGGAACTTGAGGATGAACTTATTTCGAAGCTGAA ATCTGCAATTAAAGTAGTAGTGGATGGTGGTGATGAATATTCTCTTCTTGTAAACTCTAAGAGGTTGTATGAGCTCCAATTGATGATATCTGTGCCTATT GATAATAACCTATATGATGACATTGTCATGGTGCTACGTGGTTTTAGGAATATGGAGGATGAGGTTGTTGGCTTTCTGCTTCTGAACATGTATTTGCACA TGGCTTGGGGTCTGCTATCTATTATAAATGAAGAAATTGTTTATGAAGAATCCTTAGATTCTCTTCTGTATAAGCGCGATACATTGTTACAAGAACTTGA ATACTTTTGCAACTTAGGTACTGACAGCATGGAAGGTGGTAAACAAGGAAGTGAATTAGCTTGCAGAGTATGCATCATACTTTCAGAAATATGGTTCTTA TTTAGGAGGGAAAATTTCTTCGAGACAGTGTTGGAAAGATTATTATATGAGCCAAATGACTATGTGCTTCGGAAATACTGGAAACTTTGTGAACAACAGC TTAATGTTTCAGAAGAGGAGGAAGATGAAGATGAAGATACTAATGGAGAGTATTTTCAGGAGACAAATAGATATGTTGTTTTGACTGCTGCTATAAAGGT GGTTGCTTTTGATGCTGTTCCAAAGGAGTATCTTGCTTCTGAGATTATTTCACATTTTGTAATGCATGGGACAAGTGTGGCCGAGATTGTAAAGCATTTG ATCACAGTTTTGAAGGAAAAAGATGATGATTTAGCTGCCATTTTACTCGAAGCACTTAAAAAGGCATACAATCGTCATGTTGTGGATATTTCTGGCTGTG AGACTGATTCTGCAGATAGTAACTCTTTATCGGGATGTAAAGATCTGGCCGCTCAGCTTTCTGGAATATTTATTGGTGCTGACCGGACCAAACATAAGGC AGACATTTTAGAAATTGTCAGGGGAGGTATTGAATATGCTTTTGTAGATGCTCCCACTCAGTTGTCTTTTCTGGAAGCAGCTGTGATCCATTTTGTTCCA AAACTCCCTGCATCAGATGTGTTGGAAATCATGGACGATGTTCTAAAGCGAACAGAAAATGTCAATACAGAGGAAGATCCCAGTGGCTGGCGTCCCTATC ACACATTTATTAGCTTACTTGAAAAGTATGTGAAGAATGATGGCAATCAAGGTAGTTTATTCCACTTTTTCCCTATTCGTTTTACGGTACGACCAACTAC TATAGATTCATTACTGAAACAGGCTATAGAAAATAGTCATGAATTGTTTTTCAAATATCTTCTTTCCCCTTCCTAGTGTGCTACACGATATGACCTTAAC ATGTTAAAACTAAATATTTAACCTAAGGACGACAAACATATCCATTTTCATTTTTCAGAAGAGAAAGAAGAGGCTTCTGTAAGCCGCAGGGGTCACTCTC GTAAGCCACAAAACATGGAAGGAAAGAAGCT BLAST |
Tissue | pods |
Gene name | LI_gene_181846; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_528503
Blastp | Sister-chromatid cohesion protein 3 from Arabidopsis with 61.54% of identity |
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Blastx | Sister-chromatid cohesion protein 3 from Arabidopsis with 61.23% of identity |
Eggnog | Stromal antigen(COG5537) |
Kegg | Link to kegg annotations (AT2G47980) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019444129.1) |
Pfam | STAG domain (PF08514.10) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |