Ll_transcript_379874

• Id Trinity: TRINITY_DN51442_c2_g1_i17
• Name Transcript: Ll_transcript_379874
• Sequence: CCATGTCCACCACAACACTTCACTCCACTTATCATCTCAAACTCACCGATTCAACTCGCCCTCACACCACTCGCAAACGCAAACCGAACGAGTTACCATT CAAGGAGACTCAGCAAGGTTTCGTCGACTACGACAATGGCCACCACGACGTTTCCAACAAGGTCACCGGAATCCTCAAGGACGGAATTCCCGCCCGGTAC CGAATCCGAGTCGCCGGAAACCGATTCCAGAAGGATTGGACCGTTTCTGAGGTCGTTGAATTGGTTCTCAGCCTCGACCTTAGTGATGATATTGACGGTT TATTGAACCGATGGGTTGGACGCTTCGCACGCAAGAATTTCCCTTACCTTATTAAGGAGTTGAGTCAGAGAGGGAATATTGAACATTGTAACCGCGTTTT CGAGTGGATGAAGAAGCAAAGGAATTACTGTGCTCGGAATGATATATACAATATGATGATAAGGTTGCATGCAAGGCATAATCGAGTAGACCAGGCACGT GGCTTATTTTTTGAGATGCAAAAGTGGAGGTGCAAGCCTGATGTTGAGACTTACAATGCAATTATCAATGCACATGGTCGAGCTGGACAATGGCGTTGGG CTAAGAATATCATGGAAGACATGCTACGTGCAGCTGTGTGTACTCTGTATTTTTCTTCCCTAGTCAATCTTTAATAGCACCAAGTCGGTCAACGTATAAC AACTTGATAAATGCATGTGGATCTAGTGGAAATTGGAAAGAAGCTCTTAATATTTGCAAGAAAATGACAGACAATGGAGTTGGGCCTGATCTTGTTACTC ACAATATTGTGTTATCTGCATTTAAAAGTGGGGCTCAATATTCCAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCAGACACAAC TACGCTTAATATCATCATCCATTGTCTGGTGAAGCTTGGACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGCCAC CCTGATGTTGTAACTTTCACTAGTATCATCCACTTGTATTCTGTATGTGGGCAAGTTGAAAACTGTGGGGCTGCGTTCAGTATGATCCTTGCAGAAGGGC TGAAACCAAATATAGTCTCATATAATGCACTAATAGGTGCGTATGCTGCTCGTGGGATGGACAAGGAAGCATTTTCTGTTTTCAGTGAAATAAATCAGAA TGGTTTACGCCCAGATATTGTATCCTATACATCTCTGCTTAATGCTTATGGAAGATCACAAAAGCCCCAAAAAGCAAGGGAAGTATTTGAAATGATAAAG AGGAAAAAGTTGAAGCCAAACGTTGTCAGCTACAATGCACTGATTGATGCCTATGGATCTAATGATTTGTTGGCTGAGGCAATTGAAATCTTGCGTGAGA TGGAGCAAGATGGTATTTATCCAAATGTGGTCTCAATATGCACTCTCTTGGCTGCCTGTGGGCGATGCAGTAAGAAGGTGAAGATTGATACAGTGCTATC AGCAGCAGAGATGCGAGGCATTAAATTGAATACATTTGCATATAATTCAGCTATAGGAAGCTATATGAATGTCGGGGAATACGACAAAGCTACAGGCTTG TATAAATCTATGAGGAAGAAGAAAATAAAACCTGATTCTGTTACCTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTAT CTTTTATGGAAGAGATGATGCAATTAGAACTTCCTTTGTCCAAAGAGGTCTACTCATCTATCATATGTGCCTACAGCAAACAAGGCCAAATTGCAGAAGC AGAATCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACTGCAATGCTTGATGCATACAATGCAGCCGAGAATTGGGAG AAAGCATATGCTCTCTTTGAAGAAATGGAAGTAAATGGCATCAAGCTAGATACAATTGCATGTGCAGCCCTAATGCGAGCTTTCAATGAAGGTGGCCAGT CTGGAAAGGTCCTTAGTCTTGCAAAGAATATGCGAGAAAAAGAGATTCCTTTTAGTGAAACCATCTTTTTTGAGATGGTATCTGCCTGTAGCTTGTAAGT TCAAATTTGTCCCTATATCTCCAGGGAAAACATTTTAATTAAACATTAAACCTGTCATTCTCTGGTTCTTAATTTTTTACTGGATTTCGTGGAGCTTCTA AAAATATTCATCTCCATAGTGCTTCCTCTGTTAGTGTAAGTTATTGCTAATTGAGGTTGAAGTTTGTTTACTATTTTCCTAATCTAGACATGATGGCATT TTTCCACCAGATGCAAAATTCTTATGGGTTAATACTTCTCATAATTAGGTTATTACTTGCCACTTCGATTGCTGTTTAAGCAGTAGATGGCCCTTATTCT TCAAGCACAATTTGTTGAAATTTCATATGTTTTCCTCCCATTTGATATATCTTTGTAGTCATTATTATTTTTTCACAATAATATTATGTTAAGATTTTGT TAATTTTTTTATTGGTGGAACTTCGATTAGAATAACATATTCTGATGCTCAAAAGACTAGGCAAGAAGCATAGAGAATAGGCCCTATTACTTAAACTGCT TTGATTAGATAAGCATATTTTATGGTATGATTTTTTTAATAGAGTTATTGTATTTTATTATTATTTCCCTGTTAAACTAAATGTGTCTTTTGGCGTAAGA TTACATGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATTTGTTCCTGCAATTTTTAG GAAATAGCGGGAAAAATGAAACTATGTTGAAGTTATTCTACAAAATGCTTGCATCGGGTGCTGAAGTTAACTTCAATACTTATTCTATTTTATTGAAGAA CCTTTTATCCTCGGGAAATTGGAGGAAATATTTAGAGGTACTGGAATGGATGGAAGATGCAGGAATTTATCCATCAAATGGAATGTACCGCGATTTATCC TCCTTTTCGCAAAGGTGTTGTGGGGAAGAAAATGCTGCAATCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCAGGGAACCAAGTCTCTCCAAGCC AAACCGAATCTCCCACTCTTTGTTGATCATCATCATGGGATGGATATTTTGCTTACCATAACACTATGTCCCATACTACTGAGAGTATTTCATCCCAGAA GTTGGAACTCAATTTATTGGATCATTTGCTATCCTTTGTAACTCACATTATGTTCCTTTGTAGATAATAGTTTCAGACTCTAATTTACTCATTTTTACTT CTTTTCACGCACTTGTAATTCACATGTACCTATGGCTTCATGTGACATGGAACTTATGGTAGAGATTCTCGTATAATATTTGATAATAAAGTATCTCATA GTATAAGGAGATAAACTATTCCCTGCCAATAAAATTATAACATGTGTCATGTATCAACATTTTCTACAAAAATATTTCTAAAGTTAAAAAAATAGTGCAC ATGTCATATTTTTTGTTGGCCAAAGGAGATAAGTTATCTCCATGTTATAATATTCTTATATAATGTAATGATATATATGTATTAGTATTGATAGTGTATA AGTTTGATACATCATCAATTTATTATTTTAACTATTAAAAAA
• Tissue: pods
• Gene name: LI_gene_184979;
• Additional information: details;

Expression of Ll_transcript_379874

FPKM

• PAB: 0.3
• PNAB: 0.6
• PS1: 0.5
• PS2: 1.6
• PS3: 0.6
• PW1: 0.5
• PW2: 0.9
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_379874

• Blastp: Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 69.75% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 68.62% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G41720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434154.1)
• Pfam: Pentatricopeptide repeat domain (PF13812.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;