| Id Trinity | TRINITY_DN51901_c2_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_398525 |
| Sequence | AAAAAACCGGTCCATTCATTTCGAGTCACACAGACACTGAGTTATGAAATTTCCTTCTCCGTTTCAAATTCAATTTCCTTTTTCTTCTTCTTCTTCTTCT TATAATCTTCAATTTCATTTCTATCCCCAAAACTTTCCTCTTTCAATTTACCTTCCTTTTTAAAATACCAACTTAGGGTTTTATTTCTCATATCTCACTC TCTTTCCTCTTTCCTTCATCTTCCATGTCTTCGTCAATTCGTTCCCACATCCTTCTCAACCTGCTACCTGCAATTTTCGATTTTCGTTTTTGAGTTGAAA TTAGGGTTTCGGAACTTTTTTGGTTGAAGAGTAAGAAAGGGTGAAGATATGTTTTACTCTCAGTTTATATTGGCCAAAAAAGGGCCGCTTGGGACAATAT GGATAGCTGCTCATTTAGAGAGGAAGCTCAGGAAGAATCAGGTGGCTGATACCGATATCGGCATCTCTGTTGATTCCATTCTTTTTCCTGACGTACCAAT CGCACTCCGTTTGTCCAGCCATCTTCTGCTTGGTGTGGTGAGAATTTATTCTAGAAAGGTGAATTACCTTTTTGATGACTGCAGTGAGGCTTTGCTTAAG GTAAAGCAGGCTTTTCGCTCCGCTGCAGTTGATTTGCCACCTGAAGAGTCTACTGCTCCTTACCATTCCATCACCTTACCAGAGACTTTTGATCTTGATG ATTTTGAACTGCCAGATAATGACATATTTCAAGGTAACTATGTTGATCACCATGTCAGTACTAGGGAGCAGATTACACTGCAAGATACTATGGACGGTGT GGTTTACACTAGCTCACAGTTTGGATTGGATGAGCGCTTTGGTGATGGTGACGCATCTCAAATAGGTTTAGACCTTGATGAGGTCCTGTTAACAGGCAAA GCTGCTACTATGGAGCATGATGACTTAAGTGCCAGTCCTCAATTCTCTTATCAAAAAGATGAAATGAAAGAGGAGATTGACGATCTTCCTACTGCTGCTG ACGCCGGTGAATGTGCTCAAGGTCCATCTACTCCTGGACTAGAAGAGCCAGACTTGTTTGGTACTCAGGTAGATCAGGTCAATAATGAAATTGACGATCA TAATTCAGCAGATTTGGTATCAGTGAAGAGCATGCAAGAAGTTTCCCCTGCTCAACAAAGGGATGGAGATGCTAATGTGCAGCCTGTTGGTGTGGATTTA CATCATGAGGATGATGACTGCCTTCCAGTTGAATTGGATAGAAAAAGAGAGCAAAAGGAGTATTTGGCATGTATGGTTGTGACAACAGATCAAGGTAGTC TGATACCTAATGATCATTGTTCAACATCATCACCTTTGACAATCTCCTCCAATATAGAGTGCCCAACCACCCTAATACCAGAATGTGCAGGTGGGATGAT CAATGCTTCTGGTATACCTGAGAAGATGGAAGACTCCAATGGCTTAGTTTTGATGAACAATGAACAACTTCCTTCGGACCAAACTATTACAAATTGTGTT GTTACTGGAGGAGTTAACATAAATGAAACTGCTGTATCTCTTAGTTGTTCCCATGTTATATCTGATCAAGAGAACATCTCTTGTAAACATTTGTCAAACA TGGATGGATCCCGAGGGCCAGAATCAGATGCTCATATGGAGGATGATCACACATCGCCAAAGCATGAAGTTCTAAATGCCATAGAAGTGTCTCACAATGA GGGGCTATCCTGCTCGATTGATGAGGCTCAAGTATCTAATGTTATTAGTCCTCAAGGATCAGTTGGTGAACCTCAAGTTGTTGATGAGGAAGTTCAGGTC TCTGAAGAACTGATAGAAACAGAGTCTTCAAACCATATTTCTCATGAAGTTGTGCAGCCCACCGTATCACAGCTTCAGCCATGTACCTCCCAGCTGAGCC GTCCTTCTTTGTCATCTGTTGAAGCTTATGGTGCAGATCCTGCTATAGGTCATCATGAGATCATAGAGCCATTTGTTTGTGAAGGAAACCCAGAGTCGGG GACATCAGATGTTCAAATTGAGAGTCAGATATTTTGCGATAAAGTGGAAATTATAAGTAAATCTGCTGCTTCTGATATACCAGAGCCTGAAAAAATGCTT TCCCTAGCATATCAACATGATGGTGAAACAAATAATAATCTGCCAATGGAGTCTACTCCTAACAATCAGGGTGTATCAGATGATCATACAGATCCTACAG GAGTAAAATGCATATCAGGTAACAAGCGCAGTTTCACAGAAAGTACTCTTACAATGCAGAGTGTGGATTTCATTGAATCATATGGTGGGACTCAATCCAA GAGAACCAGAGAGTCCATTCCTGATGATGATGATCTGTTGTCTTCCATATTAGATGGTAGAAGATCTTCAGTTTTAAAATTGAAACCCAGTCCGGTAGCC CCTGAAATAGTATCAATGAAACGCCCTCGTTCTGCACCACGCACTTCTGCCTTAAAGAGGAAGGTGCTCATGGATGATATGATGGTCTTGCATGGCGATA CAATACGCCAACAGCTGACAGATACTGAAGATATACGTCGCATACGGAAAAAAGCTCCTTGCACTCAGCATGAAATTTTAATGATTCAAAGACAATCTGC GGAGGATGAGATTTTTCATGAATCAATATTTACAGGTCTGTCTGCTGCTTTGGTTATTCTGCGAAATGATTCATTTGATCTGACTGGAATCAAGATCTGC GATAATGGTTTAGATAGTTCTTTCTTGGAAAAAACAAATGATGAAGGGTCCCATTCTAGAACAAATACTGAAACTCATGTTGTGGAAAGGAATATTGAAA CTATGGCAGTCCAACTCCAAGGAGATGCAGAAGCTCAACCTACCGAGGTGCCTGTTTTGTCTGAGACTCATCAGGCAGGAGTTAACTTGGGATCTCATGA TATTGATGTTCATGGTCATTCCAATATTGTTTCTAATGTGGAAGAGCTTGGCAGTTCTCCAAACATTGAAATGAACAATGCTAGTGGAAACGTTGACGTT TCCATTGCTGAAAAATGCTCTGTTGGCCCTGGGCTTGAATCTTCATCCCTAACGGTGTCTGAAAATAACCTTTGTGTGCCAAATGATTGTGTTGCATCGT TTCCTCTTTTGGATGAAGCAAATGATCTTGTTGGTTCTATGCATACAGATATACCAACCATGCCAACTGATCAGAATTTAAATACATTCCCTCTTGTAGA GGATGAGTTTGTGGAGAAATGTAATAGAAGTGGAATAGATGCTATTGAAGTAACTGAGCGTAGTGTTGAAATTAGAACACAATATCAAACAGATGATTTG GAAGCTAATGATTTATGTTCATCCATGGCTACTGGCTTTAAGGAAACTGATTTATATAATGATAATAAGGCTTCCTTCAACAGAGAACTGCCTTTAGAGG AAAATGTAAACAGCCTGTCAGGGGGCTTACATGAGGACCAAATTGTTGCTTCTGAGCTGGGGTCAAGGGGGTGTGATGACAAGGTCTCAAGGCATGGCCC CATATTTAGTGAAAATACTAAAGTAGCACTTATTTTGGATGAAAATGAGACTTCTCTGAATGAAGGAAATCAAGTTTGTGAGGAAGCTGGACAACATTCT GTAGCACTTGTTCTGGATGAAAAGGAAACTTCTCTTAATGAAGAAAATCCAATTTCTGAGGAAGCTGGACAACATTCTGTAGCATTTGTTTTGGATGAAA AGGAGACTGTTCAGAATGAAAGAAATTCAGTCTGTGAGGAAGCTGGATTACAGAGTACATTGTCCCCTGAGATCCCAGCTGTTGAGAGTCCTTTGGTAGA TCGTAATGATGAAAATTTCATAGATGCTAATGACACAGGTTTGATTCTGAATCCTTTTCATTGCTGATTCTTATACGTATGCTTAATGTGGTGTCAAGTC TACAACTGTGGTTCCTTGCTCGGCCCATGAAAGAATGGATTCCTCTTGTGGCTTAGGCATTCCTCTTGTGGCTTGGGCTCCCTTGCGTAATATGTAGAGT AGAGTCTAGGGTATATCATGGATGCTACTGCTTTAGTTCCATATTAAGTAGTTTGAATCACTTATTGCCTCTACCCCAATGTACTTGTACGACCACACGT ATAAAAAAATTAGTTGTATATCAATCACTCACTTTAAACTTATGATGTCAAAATTTCCTTAACGTCAACCCTTCCATCTCTACTTTCCTATACTCATAAC TGTGGTCACTCTGTGTAGCTTATTCTTACCAGTCACCAGAGGCTGGTTTTACTTTTTATTATTATTTAAGTTTTGAAAATTAAAATGAATAATTAATATA CCACTGCAAGAAGTAAGGACTGAAACAGGAGACTGGAGCTTTGTTGCTGGTATTCTTTGTTTATTTGATCATTGTAAATCCATCATCTCTCACTTTTCAG GGTTTTTGAATGTTGGTGATGATGAGATGATTGAAGATGATGATGATGATTTTATGCCAAGTGCTGAAGGATCTCACCTTGAAAATAGTGGATGGTCTTC CCGGACCAGGGCTGTTGCCAAGTATCTGCAAATTTCGTTTGAGAAGGAAGATCTACATGGAAGGCAGAACCTGTGCCTTGACAATATATTAGCTGGTAAA ACACGTAAGGAAGCATCAAGGATGTTTTTTGAAACACTGGTTCTCAAGACAAAGGATTATGTTCATGTTGAACAAACAAAACCCTTTTCCAGTATTAACA TAAAACCAAGAATGAAGCTGATGAAATCAGATTTCTGAAACCTCATGTTGCAGTGTAGTTTTCTAGTTATGGCTTCTTATTTATTATATTTTTTGGAGTA GAATGAAGTCATTTACTTGGTGAAAGGGCTTGCCTAGTGAGGTTGAAGTGGCTGTGTCACCCTATTGATTGTAGTAAGAATATGGTAATGTATTTATGTA TGTGTGTGTAACACTTTCCCATTTGTAACTTATAGGCTCTAATTTGCATCTTGTTTTAACCAAAGTATGATATTCTGTCACCCCTGGGCATTTAGTAATA ATGGAGAATTGGCACTGTAATTTAGTCTTTGTTGAACTAAGTCAATCATTTATGTACTTATTTATTCTGTTTGTCTAGTATCTAAATGAGTATTCAGGTC CACTTTCAGGTCATTTTGTATTCTGTTGAGCAATGAAACAATGCCATATACAATATTTATAATCACCATAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_188442; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_398525
| Blastp | Sister chromatid cohesion 1 protein 4 from Arabidopsis with 73.05% of identity |
|---|---|
| Blastx | Sister chromatid cohesion 1 protein 4 from Arabidopsis with 73.05% of identity |
| Eggnog | Doublestrandbreak repair protein rad21(ENOG410XRB4) |
| Kegg | Link to kegg annotations (AT5G16270) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449918.1) |
| Pfam | N terminus of Rad21 / Rec8 like protein (PF04825.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |