Ll_transcript_472442

• Id Trinity: TRINITY_DN52089_c1_g1_i14
• Name Transcript: Ll_transcript_472442
• Sequence: AAAATAGCAAAAAAAAATTACACTATGATACTTATTTAGTGTTTTGCCATTGGATACTTGCCTACATCTATTGTTTAAGGTATTTATTTGTCAACATTTC TAAGATTAAGACGGTTGATATCTGTCCCTTCAATATACGCGTTAGTAATGCTCTTTAAATATGACAATTGTCTTTGTCTTCTGTGTCACAGAAGAAAACT GAAACCGGCACTCAGATTTATAGTCATAGTCAAACTATGAAGCACTATTCAAAACTCAAAAACTTCCATGTGATTTTCTTAGTTCTTTTTCCTAATGCAC TTATGTAGTTTTGAGTTGTGAATTCTGATCCTTTTGTTTCATGAATTTTGCCTCCACTACATTCTTCTATATATGCTGATTCCTTAAGTGCAGTACATGA AAAAGTGTTTAGTTTATGTAGCACCTTTGAAGATTTCCTTGCCATGATGGTGTTTGAGATAAACAATGATTTTGTGCAGGTTATTGGGGTTATCTCTGCA ATTCTATTATTGGTATCATTAAGAGTCAAAGTAGCATCATGTGATGAGTACCCTGCTATGCATTGCAGAAAACACAGTGCATTTTTGACTGATTTTGGTG GGGTTGGTGATGGCAAAACATGCAACACCAAGGCCTTTCAATATGCTATTAGCAATCTCAGCCAATATGCATGTGATGGGGGAGCACTACTTGTTGTTCC ACCTGGGAAATGGTTAACAGGAAGCTTCAATCTAACTAGCCATTTCACCCTTTTTCTTCAAAAAGATGCTGTTATTCTTGCTTCTCAGGTTTTTACTTAC TCCCCCTTTTTCTCAACAATCATAAATTCATAACCTTGCATATGCATAGTTTTATTATTTGATTACAATTACAAAAAACACCTCTTTTCTAGGATGAAAA TTGTTATAAGTTACCCACATTAGGGAAGTGATTTAGCCATTAAATAGGTAGGATGAATTATTGGTTTGCTTTATTGTGAATGCTGTGATCTAATGATGTG GTAACGTCAACAAAATCCTTAGTTCAAAGCACATCCTAGTTAGTAACACAGTTAGTCTTTCAAGTTTCAACAATGATACTCAACAAACACATGAGTGACA GAGGACAGAAGTTAGAAGATAGGATTGGTTTATAGTAGTGCAATGTTTAACTTGCTTTCTTTTCTGTATGGCACATGTGCACCTTTTTGTAATTTTCTTT TTGATGAGATGACACATGTTCACATTATTTTCCCCTGTAGAATATATAAAATGGAAGATGCTTAACAGTTGCTAGCAAAGAAAAAAAGGGTATAGCTTTT TAATGTTGTGGTGAAGCCCATTGACTAGAGATTCATGCATGCAATAAAATAACTAGAAAGTTGGGTATCTAATTTCCTATTTCTGATGTTTTGTCAACGG ACATATTTATAATATAACATTATGGCATCGTTCGACTCATTTAGCTGACCTCACCTAATGAGATTACGGTTTGGTTGTTATTGTTGTAATTTCCTGTATC TCTCACATACCAATGATTTCTTGGCATGTTAGTTCAGCATCCTTTGACTTCACAATATTGGTGAACATTGACAGGATGAATCAGAATGGCCTCATCTTCC TGTCCTACCATCATATGGCAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTTATAATTACGGGCTAC AATGGAACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCCACAGAGGTGAATTGAATCTCACGAGGCCATACTTGATTGAGATTATGTTCTCAG ATCATATCCAGATATCAAATCTTACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGCGACATTATAATTCAAGGGCTAACCATTTT TGCGCCAGTTGACTCTCCCAAC
• Tissue: pods
• Gene name: LI_gene_189957;
• Additional information: details;

Expression of Ll_transcript_472442

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0
• PS2: 0.1
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_472442

• Blastp: Probable polygalacturonase from Vitis with 65.22% of identity
• Blastx: Probable polygalacturonase from Vitis with 72.65% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019450638.1)
• Pfam: Pectate lyase superfamily protein (PF12708.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;