miRNA 154 details

Id Micro154
SequenceGCTCAAGAAAGCTGTGGGAAA 
Annotated namesaly-miR396b-3p; ath-miR396b-3p; bra-miR396-3p; 
Annotated pre-miRNANone

Targets of miRNA 154

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_44160; FTRINITY_DN54154_c0_g2_i1 419 439 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_44170; FTRINITY_DN54154_c0_g2_i6 419 439 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_44169; FTRINITY_DN54154_c0_g2_i5 1544 1564 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_44166; FTRINITY_DN54154_c0_g2_i3 1544 1564 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_44162; FTRINITY_DN54154_c0_g2_i2 1544 1564 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_234397; FTRINITY_DN52817_c0_g2_i2 237 257 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_234396; FTRINITY_DN52817_c0_g3_i1 288 308 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_234394; FTRINITY_DN52817_c0_g1_i3 97 117 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_234395; FTRINITY_DN52817_c0_g2_i1 237 257 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8856; FTRINITY_DN56889_c3_g10_i1 158 178 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8842; FTRINITY_DN56889_c3_g2_i1 202 222 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8855; FTRINITY_DN56889_c3_g6_i3 133 153 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8846; FTRINITY_DN56889_c3_g3_i2 133 153 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8843; FTRINITY_DN56889_c3_g3_i1 133 153 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8863; FTRINITY_DN56889_c3_g2_i3 202 222 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_8858; FTRINITY_DN56889_c3_g2_i2 202 222 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_27976; FTRINITY_DN61139_c0_g1_i1 19 39 TTTCACACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_93621; FTRINITY_DN54848_c2_g4_i7 1555 1575 ACTCTCACAGCTTGCTTGAGA BLAST psRNATarget
Ll_transcript_142115; FTRINITY_DN54041_c10_g5_i1 30 50 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_193645; FTRINITY_DN55783_c1_g4_i5 1825 1845 CATTCCATAGCTTTCTTAAGT BLAST psRNATarget
Ll_transcript_154653; FTRINITY_DN56516_c1_g2_i2 2118 2138 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_154655; FTRINITY_DN56516_c1_g1_i4 3638 3658 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_154656; FTRINITY_DN56516_c1_g1_i5 3709 3729 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_154668; FTRINITY_DN56516_c1_g1_i14 4098 4118 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_154669; FTRINITY_DN56516_c1_g1_i15 4397 4417 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_130396; FTRINITY_DN32480_c0_g1_i1 154 174 TTTCCAGCAGCTTTTTTTAGC BLAST psRNATarget
Ll_transcript_28920; FTRINITY_DN52279_c0_g2_i3 498 518 ATTTTTACAGCTTTATTGAGT BLAST psRNATarget
Ll_transcript_248829; FTRINITY_DN55935_c2_g1_i16 158 178 ATTCGCACAGTTCTTTTGAGC BLAST psRNATarget
Ll_transcript_248842; FTRINITY_DN55935_c2_g1_i28 158 178 ATTCGCACAGTTCTTTTGAGC BLAST psRNATarget
Ll_transcript_213794; FTRINITY_DN57758_c1_g1_i9 1808 1828 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_213784; FTRINITY_DN57758_c1_g1_i1 1954 1974 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_213798; FTRINITY_DN57758_c1_g1_i12 2330 2350 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_213793; FTRINITY_DN57758_c1_g1_i8 2476 2496 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_23146; FTRINITY_DN53891_c0_g2_i1 128 148 CCACCTGCAGCTTTCTTTAGC BLAST psRNATarget
Ll_transcript_55237; FTRINITY_DN57201_c0_g2_i1 475 495 TCTCCCACACCATTCTTGGGC BLAST psRNATarget
Ll_transcript_296292; TRINITY_DN51700_c0_g1_i19 606 626 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296299; TRINITY_DN51700_c0_g1_i25 683 703 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296289; TRINITY_DN51700_c0_g1_i16 1099 1119 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296276; TRINITY_DN51700_c0_g1_i4 1099 1119 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296277; TRINITY_DN51700_c0_g1_i5 1546 1566 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296295; TRINITY_DN51700_c0_g1_i21 1546 1566 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296304; TRINITY_DN51700_c0_g1_i30 1099 1119 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_296296; TRINITY_DN51700_c0_g1_i22 1546 1566 GCTCCCATAGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_437029; TRINITY_DN48937_c3_g2_i4 188 208 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437028; TRINITY_DN48937_c3_g2_i3 262 282 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437024; TRINITY_DN48937_c3_g1_i1 211 231 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437031; TRINITY_DN48937_c3_g1_i3 211 231 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437037; TRINITY_DN48937_c3_g2_i11 188 208 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437034; TRINITY_DN48937_c3_g2_i8 262 282 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437025; TRINITY_DN48937_c3_g2_i1 262 282 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_437032; TRINITY_DN48937_c3_g2_i6 188 208 TTTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_384439; TRINITY_DN47273_c3_g9_i1 158 178 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_384425; TRINITY_DN47273_c3_g3_i1 127 147 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_384432; TRINITY_DN47273_c3_g2_i5 152 172 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_384437; TRINITY_DN47273_c3_g7_i1 129 149 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_384430; TRINITY_DN47273_c3_g2_i3 152 172 TCTTCCACAGCTTTCTTGAAC BLAST psRNATarget
Ll_transcript_287006; TRINITY_DN69671_c0_g1_i1 2 22 TCCCCCACAACTTTCTTGAGT BLAST psRNATarget
Ll_transcript_354789; TRINITY_DN49457_c2_g1_i2 1551 1571 ACTCTCACAGCTTGCTTGAGA BLAST psRNATarget
Ll_transcript_404738; TRINITY_DN50529_c2_g2_i2 993 1013 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_345828; TRINITY_DN50464_c2_g1_i3 1827 1847 CATTCCATAGCTTTCTTAAGT BLAST psRNATarget
Ll_transcript_345829; TRINITY_DN50464_c2_g1_i4 1906 1926 CATTCCATAGCTTTCTTAAGT BLAST psRNATarget
Ll_transcript_345836; TRINITY_DN50464_c2_g1_i9 1989 2009 CATTCCATAGCTTTCTTAAGT BLAST psRNATarget
Ll_transcript_345833; TRINITY_DN50464_c2_g1_i7 2211 2231 CATTCCATAGCTTTCTTAAGT BLAST psRNATarget
Ll_transcript_404741; TRINITY_DN50529_c2_g2_i3 2631 2651 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404731; TRINITY_DN50529_c2_g2_i1 3490 3510 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404732; TRINITY_DN50529_c2_g1_i7 4474 4494 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404756; TRINITY_DN50529_c2_g1_i27 4477 4497 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404742; TRINITY_DN50529_c2_g1_i14 4480 4500 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404726; TRINITY_DN50529_c2_g1_i2 4566 4586 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404746; TRINITY_DN50529_c2_g1_i18 4569 4589 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404725; TRINITY_DN50529_c2_g1_i1 4588 4608 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404744; TRINITY_DN50529_c2_g1_i16 4591 4611 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404733; TRINITY_DN50529_c2_g1_i8 4594 4614 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404730; TRINITY_DN50529_c2_g1_i6 4604 4624 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404752; TRINITY_DN50529_c2_g1_i23 4607 4627 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404748; TRINITY_DN50529_c2_g1_i20 4610 4630 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_404745; TRINITY_DN50529_c2_g1_i17 4699 4719 GATCTTATGGTTTTCTTGAGT BLAST psRNATarget
Ll_transcript_318122; TRINITY_DN37125_c0_g1_i1 919 939 TTTCCAGCAGCTTTTTTTAGC BLAST psRNATarget
Ll_transcript_496699; TRINITY_DN50240_c2_g1_i1 419 439 ATTCGCACAGTTCTTTTGAGC BLAST psRNATarget
Ll_transcript_496712; TRINITY_DN50240_c2_g1_i8 419 439 ATTCGCACAGTTCTTTTGAGC BLAST psRNATarget
Ll_transcript_496723; TRINITY_DN50240_c2_g1_i12 419 439 ATTCGCACAGTTCTTTTGAGC BLAST psRNATarget
Ll_transcript_449762; TRINITY_DN50643_c1_g1_i6 1764 1784 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_449757; TRINITY_DN50643_c1_g1_i3 1764 1784 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_449756; TRINITY_DN50643_c1_g1_i2 1910 1930 GTTCACACACCTTTTTTGGGC BLAST psRNATarget
Ll_transcript_496709; TRINITY_DN50240_c2_g1_i6 2653 2673 ATTCGCACAGTTCTTTTGAGC BLAST psRNATarget
Ll_transcript_475740; TRINITY_DN47498_c2_g3_i1 453 473 TCTCCCACACCATTCTTGGGC BLAST psRNATarget

Expression of miRNA 154


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)