miRNA 172 details

Id Micro172
SequenceGGAATGTCGTCTGGCGCGAGA 
Annotated nameszma-miR166i-5p; 
Annotated pre-miRNANone

Targets of miRNA 172

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_137058; FTRINITY_DN58074_c0_g1_i14 1717 1737 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137061; FTRINITY_DN58074_c0_g1_i16 2584 2604 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137056; FTRINITY_DN58074_c0_g1_i13 2837 2857 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137042; FTRINITY_DN58074_c0_g1_i8 2966 2986 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_137060; FTRINITY_DN58074_c0_g1_i15 3219 3239 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_76208; FTRINITY_DN55596_c1_g1_i3 986 1006 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_76220; FTRINITY_DN55596_c1_g1_i5 1290 1310 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_76217; FTRINITY_DN55596_c1_g1_i4 1390 1410 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_76203; FTRINITY_DN55596_c1_g1_i1 2294 2314 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_270079; FTRINITY_DN71856_c0_g1_i1 109 129 TGTTGTGTTAGACGATATTTC BLAST psRNATarget
Ll_transcript_115171; FTRINITY_DN59322_c1_g1_i26 2404 2424 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_115170; FTRINITY_DN59322_c1_g1_i25 2495 2515 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_115144; FTRINITY_DN59322_c1_g1_i1 2404 2424 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_115160; FTRINITY_DN59322_c1_g1_i15 2495 2515 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_115155; FTRINITY_DN59322_c1_g1_i11 2638 2658 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_85709; FTRINITY_DN56651_c2_g7_i1 52 72 TATTTTGCCAGACGATATTTC BLAST psRNATarget
Ll_transcript_26368; FTRINITY_DN51704_c0_g1_i4 2534 2554 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26381; FTRINITY_DN51704_c0_g1_i17 2741 2761 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26376; FTRINITY_DN51704_c0_g1_i12 2830 2850 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26372; FTRINITY_DN51704_c0_g1_i8 2848 2868 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26365; FTRINITY_DN51704_c0_g1_i1 2943 2963 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26379; FTRINITY_DN51704_c0_g1_i15 3217 3237 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26367; FTRINITY_DN51704_c0_g1_i3 2933 2953 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26374; FTRINITY_DN51704_c0_g1_i10 3028 3048 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26366; FTRINITY_DN51704_c0_g1_i2 3033 3053 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_26375; FTRINITY_DN51704_c0_g1_i11 3319 3339 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_232846; FTRINITY_DN50318_c0_g2_i2 2408 2428 AGTTGCTCCACACGACATTCC BLAST psRNATarget
Ll_transcript_232845; FTRINITY_DN50318_c0_g2_i1 2408 2428 AGTTGCTCCACACGACATTCC BLAST psRNATarget
Ll_transcript_232847; FTRINITY_DN50318_c0_g2_i3 2408 2428 AGTTGCTCCACACGACATTCC BLAST psRNATarget
Ll_transcript_266970; FTRINITY_DN55818_c1_g3_i14 176 196 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266940; FTRINITY_DN55818_c1_g3_i4 735 755 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266963; FTRINITY_DN55818_c1_g3_i12 1043 1063 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266938; FTRINITY_DN55818_c1_g3_i2 1075 1095 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266957; FTRINITY_DN55818_c1_g3_i10 1043 1063 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266949; FTRINITY_DN55818_c1_g3_i8 735 755 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266946; FTRINITY_DN55818_c1_g3_i7 1161 1181 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266982; FTRINITY_DN55818_c1_g3_i19 1368 1388 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266983; FTRINITY_DN55818_c1_g3_i20 1043 1063 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266990; FTRINITY_DN55818_c1_g3_i22 1486 1506 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266981; FTRINITY_DN55818_c1_g3_i18 1075 1095 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_266984; FTRINITY_DN55818_c1_g3_i21 1161 1181 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_88905; FTRINITY_DN53948_c0_g2_i1 106 126 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_88914; FTRINITY_DN53948_c0_g2_i5 1231 1251 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_88908; FTRINITY_DN53948_c0_g2_i3 1231 1251 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_273585; FTRINITY_DN54293_c4_g1_i1 121 141 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_175007; FTRINITY_DN44594_c0_g1_i3 489 509 TTTTGCCTCTGACGACATTCC BLAST psRNATarget
Ll_transcript_175005; FTRINITY_DN44594_c0_g1_i1 489 509 TTTTGCCTCTGACGACATTCC BLAST psRNATarget
Ll_transcript_273588; FTRINITY_DN54293_c4_g1_i3 1880 1900 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_273597; FTRINITY_DN54293_c4_g1_i10 1880 1900 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_273592; FTRINITY_DN54293_c4_g1_i7 4167 4187 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_221063; FTRINITY_DN52092_c5_g2_i7 229 249 ATTCCTGCCAGATGATATTTT BLAST psRNATarget
Ll_transcript_221059; FTRINITY_DN52092_c5_g2_i5 603 623 ATTCCTGCCAGATGATATTTT BLAST psRNATarget
Ll_transcript_221053; FTRINITY_DN52092_c5_g2_i3 229 249 ATTCCTGCCAGATGATATTTT BLAST psRNATarget
Ll_transcript_221066; FTRINITY_DN52092_c5_g2_i9 603 623 ATTCCTGCCAGATGATATTTT BLAST psRNATarget
Ll_transcript_144368; FTRINITY_DN51962_c0_g1_i3 6 26 AATCTCGTTAAACGACATTCC BLAST psRNATarget
Ll_transcript_65271; FTRINITY_DN55376_c1_g3_i2 154 174 CATCTTGCCAGATGTCATTCC BLAST psRNATarget
Ll_transcript_509268; TRINITY_DN48101_c1_g2_i2 2602 2622 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_509281; TRINITY_DN48101_c1_g2_i5 2984 3004 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_509263; TRINITY_DN48101_c1_g2_i1 3237 3257 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_509277; TRINITY_DN48101_c1_g2_i4 2602 2622 TGTTGAGCCAGACGGCATTTC BLAST psRNATarget
Ll_transcript_291389; TRINITY_DN49112_c0_g1_i27 1177 1197 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_291362; TRINITY_DN49112_c0_g1_i4 1390 1410 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_291382; TRINITY_DN49112_c0_g1_i21 2004 2024 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_291373; TRINITY_DN49112_c0_g1_i14 2319 2339 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_291379; TRINITY_DN49112_c0_g1_i19 2723 2743 GTTTGTGCTAGATGACATTCA BLAST psRNATarget
Ll_transcript_479424; TRINITY_DN52767_c0_g2_i2 132 152 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_479428; TRINITY_DN52767_c0_g2_i4 166 186 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_479426; TRINITY_DN52767_c0_g2_i3 455 475 CTTTTCGCTAGATGACATTTC BLAST psRNATarget
Ll_transcript_328170; TRINITY_DN48092_c2_g1_i21 2284 2304 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328138; TRINITY_DN48092_c2_g1_i6 2933 2953 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328148; TRINITY_DN48092_c2_g1_i11 3503 3523 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328176; TRINITY_DN48092_c2_g1_i22 3542 3562 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328128; TRINITY_DN48092_c2_g1_i1 3419 3439 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328135; TRINITY_DN48092_c2_g1_i5 3930 3950 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328161; TRINITY_DN48092_c2_g1_i18 3640 3660 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_328131; TRINITY_DN48092_c2_g1_i2 3926 3946 GGCCGCATCAGATGACATTCC BLAST psRNATarget
Ll_transcript_452301; TRINITY_DN43203_c0_g1_i1 2462 2482 AGTTGCTCCACACGACATTCC BLAST psRNATarget
Ll_transcript_456075; TRINITY_DN49928_c0_g2_i4 581 601 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_456071; TRINITY_DN49928_c0_g2_i2 1030 1050 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_456089; TRINITY_DN49928_c0_g2_i13 1148 1168 AGTTCCCCCAGATGACATTCC BLAST psRNATarget
Ll_transcript_359719; TRINITY_DN47615_c0_g3_i3 1235 1255 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_359725; TRINITY_DN47615_c0_g3_i4 1235 1255 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_359710; TRINITY_DN47615_c0_g3_i1 1265 1285 TCTCGCTCTAGACAACATTTC BLAST psRNATarget
Ll_transcript_408632; TRINITY_DN51610_c1_g1_i1 263 283 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_495933; TRINITY_DN41836_c0_g1_i1 593 613 TTTTGCCTCTGACGACATTCC BLAST psRNATarget
Ll_transcript_408644; TRINITY_DN51610_c1_g1_i5 263 283 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_495935; TRINITY_DN41836_c0_g1_i3 593 613 TTTTGCCTCTGACGACATTCC BLAST psRNATarget
Ll_transcript_408639; TRINITY_DN51610_c1_g1_i3 263 283 TTTTGCTTCAGATGGCGTTCC BLAST psRNATarget
Ll_transcript_495934; TRINITY_DN41836_c0_g1_i2 593 613 TTTTGCCTCTGACGACATTCC BLAST psRNATarget
Ll_transcript_360377; TRINITY_DN47684_c3_g2_i1 186 206 ATTCCTGCCAGATGATATTTT BLAST psRNATarget
Ll_transcript_360391; TRINITY_DN47684_c3_g2_i5 186 206 ATTCCTGCCAGATGATATTTT BLAST psRNATarget
Ll_transcript_411105; TRINITY_DN44953_c0_g1_i2 544 564 AATCTCGTTAAACGACATTCC BLAST psRNATarget

Expression of miRNA 172


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)