miRNA 4 details

Id Micro4
SequenceAACCAGGCTCTGATACCATG 
Annotated namesgma-miR1511; 
Annotated pre-miRNANone

Targets of miRNA 4

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details

Ll_transcript_75985; FTRINITY_DN55547_c2_g1_i13 1918 1937 TTTGGTATCAGAGCTTGGTA BLAST psRNATarget
Ll_transcript_75983; FTRINITY_DN55547_c2_g1_i12 2686 2705 TTTGGTATCAGAGCTTGGTA BLAST psRNATarget
Ll_transcript_75968; FTRINITY_DN55547_c2_g1_i5 2764 2783 TTTGGTATCAGAGCTTGGTA BLAST psRNATarget
Ll_transcript_75964; FTRINITY_DN55547_c2_g1_i3 2994 3013 TTTGGTATCAGAGCTTGGTA BLAST psRNATarget
Ll_transcript_75962; FTRINITY_DN55547_c2_g1_i1 3528 3547 TTTGGTATCAGAGCTTGGTA BLAST psRNATarget
Ll_transcript_24725; FTRINITY_DN53848_c2_g1_i5 197 216 ATTGGTATCAGAGCCAGGTT BLAST psRNATarget
Ll_transcript_149164; FTRINITY_DN57602_c0_g1_i1 143 162 AGTGGTATCAGAGTCTGGAT BLAST psRNATarget
Ll_transcript_22005; FTRINITY_DN55115_c0_g1_i3 1542 1561 GATATTGTCAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_22007; FTRINITY_DN55115_c0_g1_i5 1554 1573 GATATTGTCAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_22003; FTRINITY_DN55115_c0_g1_i1 1580 1599 GATATTGTCAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_22004; FTRINITY_DN55115_c0_g1_i2 2189 2208 GATATTGTCAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_227953; FTRINITY_DN52723_c1_g2_i1 17 36 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_206087; FTRINITY_DN51119_c0_g1_i5 820 839 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_206084; FTRINITY_DN51119_c0_g1_i2 1084 1103 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_206086; FTRINITY_DN51119_c0_g1_i4 1301 1320 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_27193; FTRINITY_DN51516_c0_g1_i5 876 895 TTTGGTATCAGAGTCTGCTT BLAST psRNATarget
Ll_transcript_191492; FTRINITY_DN55749_c0_g2_i4 1004 1023 AATGGTATCAGAGCTTAGTA BLAST psRNATarget
Ll_transcript_274828; FTRINITY_DN54218_c3_g7_i4 332 351 AGTGGTATTAAAGCTTGGTT BLAST psRNATarget
Ll_transcript_271448; FTRINITY_DN51015_c0_g1_i3 720 739 AATGGTATTAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_271445; FTRINITY_DN51015_c0_g1_i1 720 739 AATGGTATTAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_27351; FTRINITY_DN51555_c1_g2_i8 1673 1692 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_27348; FTRINITY_DN51555_c1_g2_i5 1786 1805 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_27346; FTRINITY_DN51555_c1_g2_i3 1673 1692 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_27350; FTRINITY_DN51555_c1_g2_i7 1786 1805 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_4805; FTRINITY_DN48860_c0_g1_i2 261 280 TTTGGTTTCAGGGCTTGGTT BLAST psRNATarget
Ll_transcript_4804; FTRINITY_DN48860_c0_g1_i1 261 280 TTTGGTTTCAGGGCTTGGTT BLAST psRNATarget
Ll_transcript_164573; FTRINITY_DN53266_c0_g1_i5 1177 1196 TATGGTATTAGAGTCTGGCG BLAST psRNATarget
Ll_transcript_25533; FTRINITY_DN53827_c1_g2_i1 436 455 TATGGTATTAGAGTCTGTTC BLAST psRNATarget
Ll_transcript_37253; FTRINITY_DN58974_c0_g1_i22 916 935 TGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_82506; FTRINITY_DN50431_c0_g1_i2 358 377 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_82505; FTRINITY_DN50431_c0_g1_i1 358 377 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_82507; FTRINITY_DN50431_c0_g1_i3 358 377 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_37224; FTRINITY_DN58974_c0_g1_i3 1548 1567 TGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_82510; FTRINITY_DN50431_c0_g1_i4 358 377 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_82511; FTRINITY_DN50431_c0_g1_i5 358 377 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_37225; FTRINITY_DN58974_c0_g1_i4 2166 2185 TGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_115534; FTRINITY_DN59352_c2_g3_i1 238 257 AGTGGTATCAGAGCTTTGTG BLAST psRNATarget
Ll_transcript_163215; FTRINITY_DN53209_c11_g1_i1 173 192 AGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_250938; FTRINITY_DN4008_c0_g1_i1 43 62 AATGGTATTTGAGCCTGGAT BLAST psRNATarget
Ll_transcript_241786; FTRINITY_DN53085_c3_g1_i3 15 34 AGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_217835; FTRINITY_DN56399_c3_g1_i1 657 676 AATGGTATCAGAGCTTCTTT BLAST psRNATarget
Ll_transcript_61796; FTRINITY_DN56271_c2_g1_i2 240 259 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_181456; FTRINITY_DN53511_c1_g3_i6 360 379 AGTGGTGTCAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_61794; FTRINITY_DN56271_c2_g1_i1 240 259 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_61815; FTRINITY_DN56271_c2_g1_i3 240 259 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_241784; FTRINITY_DN53085_c3_g1_i2 15 34 AGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_61822; FTRINITY_DN56271_c2_g1_i4 240 259 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_241798; FTRINITY_DN53085_c3_g1_i8 15 34 AGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_360581; TRINITY_DN47635_c3_g1_i4 1493 1512 TTTGGTATCAGAGCTTGGTA BLAST psRNATarget
Ll_transcript_387727; TRINITY_DN50987_c2_g7_i1 191 210 ATTGGTATCAGAGGCTGGTT BLAST psRNATarget
Ll_transcript_397312; TRINITY_DN51915_c1_g2_i2 94 113 ATTGGTATCAGAGCCAGGTT BLAST psRNATarget
Ll_transcript_437822; TRINITY_DN48902_c3_g2_i11 473 492 AGTGGTATCAGAGTCTGGAT BLAST psRNATarget
Ll_transcript_290418; TRINITY_DN39342_c0_g1_i1 528 547 GATATTGTCAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_420298; TRINITY_DN48739_c3_g4_i2 133 152 CATGGTATCAGAGCCTAATT BLAST psRNATarget
Ll_transcript_440145; TRINITY_DN48367_c4_g1_i13 2431 2450 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_440159; TRINITY_DN48367_c4_g1_i27 2444 2463 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_440157; TRINITY_DN48367_c4_g1_i25 2696 2715 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_440143; TRINITY_DN48367_c4_g1_i11 2709 2728 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_440138; TRINITY_DN48367_c4_g1_i6 3168 3187 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_440150; TRINITY_DN48367_c4_g1_i18 3181 3200 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_440134; TRINITY_DN48367_c4_g1_i2 3433 3452 CATGGTATCAGAGCCTCTTT BLAST psRNATarget
Ll_transcript_283465; TRINITY_DN44687_c0_g1_i2 943 962 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_283467; TRINITY_DN44687_c0_g1_i4 1041 1060 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_283464; TRINITY_DN44687_c0_g1_i1 1287 1306 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_283466; TRINITY_DN44687_c0_g1_i3 1385 1404 CATGTTATCATAGTCTGGTT BLAST psRNATarget
Ll_transcript_356813; TRINITY_DN45820_c0_g1_i3 951 970 AATGGTATCAGAGCTTAGTA BLAST psRNATarget
Ll_transcript_304860; TRINITY_DN52228_c1_g2_i1 159 178 AATGGTATTAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_304880; TRINITY_DN52228_c1_g2_i4 159 178 AATGGTATTAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_304875; TRINITY_DN52228_c1_g2_i3 159 178 AATGGTATTAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_412068; TRINITY_DN45033_c0_g1_i20 1530 1549 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412056; TRINITY_DN45033_c0_g1_i8 1530 1549 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412067; TRINITY_DN45033_c0_g1_i19 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412063; TRINITY_DN45033_c0_g1_i15 1530 1549 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412054; TRINITY_DN45033_c0_g1_i6 1660 1679 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412053; TRINITY_DN45033_c0_g1_i5 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412060; TRINITY_DN45033_c0_g1_i12 1530 1549 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412055; TRINITY_DN45033_c0_g1_i7 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412057; TRINITY_DN45033_c0_g1_i9 1773 1792 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412052; TRINITY_DN45033_c0_g1_i4 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412064; TRINITY_DN45033_c0_g1_i16 1530 1549 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412050; TRINITY_DN45033_c0_g1_i2 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412061; TRINITY_DN45033_c0_g1_i13 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_412051; TRINITY_DN45033_c0_g1_i3 1643 1662 AGTGGTATTACAGCTTGGTT BLAST psRNATarget
Ll_transcript_337250; TRINITY_DN48575_c1_g4_i2 124 143 TTTGGTTTCAGGGCTTGGTT BLAST psRNATarget
Ll_transcript_337247; TRINITY_DN48575_c1_g4_i1 124 143 TTTGGTTTCAGGGCTTGGTT BLAST psRNATarget
Ll_transcript_401295; TRINITY_DN57612_c0_g1_i1 4 23 GAGGGTGTTGGAGCTTGGTT BLAST psRNATarget
Ll_transcript_434460; TRINITY_DN46670_c5_g1_i1 403 422 TATGGTATTAGAGTCTGTTC BLAST psRNATarget
Ll_transcript_475835; TRINITY_DN47446_c0_g11_i1 440 459 CGTGGGATTAGGGTTTGGTT BLAST psRNATarget
Ll_transcript_348817; TRINITY_DN52440_c1_g1_i4 778 797 TGTGGTATTAAGGCTTGGTT BLAST psRNATarget
Ll_transcript_299699; TRINITY_DN51524_c1_g1_i3 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_299703; TRINITY_DN51524_c1_g1_i5 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_299718; TRINITY_DN51524_c1_g1_i11 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_299714; TRINITY_DN51524_c1_g1_i8 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_299702; TRINITY_DN51524_c1_g1_i4 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_299698; TRINITY_DN51524_c1_g1_i2 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_299710; TRINITY_DN51524_c1_g1_i7 334 353 GTGGGTATGAGAGCCTGGTT BLAST psRNATarget
Ll_transcript_401876; TRINITY_DN75265_c0_g1_i1 178 197 AGTGGTATCAGAGCTTTGTG BLAST psRNATarget
Ll_transcript_329000; TRINITY_DN39593_c0_g1_i2 126 145 AATGGTATCAGAGCTTCTTT BLAST psRNATarget
Ll_transcript_292794; TRINITY_DN49176_c0_g5_i1 157 176 AATGGTATTTGAGCCTGGAT BLAST psRNATarget
Ll_transcript_322053; TRINITY_DN60963_c0_g1_i1 45 64 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_467745; TRINITY_DN49219_c0_g1_i1 415 434 AATGGTGTTAGAGTTTGGAT BLAST psRNATarget
Ll_transcript_328999; TRINITY_DN39593_c0_g1_i1 126 145 AATGGTATCAGAGCTTCTTT BLAST psRNATarget
Ll_transcript_451315; TRINITY_DN50671_c2_g8_i3 159 178 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_510527; TRINITY_DN48150_c3_g3_i6 358 377 AGTGGTGTCAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_510513; TRINITY_DN48150_c3_g3_i3 358 377 AGTGGTGTCAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_451297; TRINITY_DN50671_c2_g8_i2 159 178 GATGGTATCAGAGCTTTGAT BLAST psRNATarget
Ll_transcript_510520; TRINITY_DN48150_c3_g3_i4 358 377 AGTGGTGTCAAAGTTTGGTT BLAST psRNATarget
Ll_transcript_451289; TRINITY_DN50671_c2_g8_i1 159 178 GATGGTATCAGAGCTTTGAT BLAST psRNATarget

Expression of miRNA 4


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)