miRNA 42 details

Id Micro42
SequenceAGCCGTAAACGATGGATACT 
Annotated nameshbr-miR6173; 
Annotated pre-miRNANone

Targets of miRNA 42

LuluDB transcript

ID Trinity

Target start position

Target end position

Target sequence

BLAST target sequence

Annotation method

Target details
Ll_transcript_155198; FTRINITY_DN56568_c5_g1_i3 1720 1739 GGTATCCATTGTTTATGGCA BLAST psRNATarget
Ll_transcript_155184; FTRINITY_DN56568_c5_g1_i1 1720 1739 GGTATCCATTGTTTATGGCA BLAST psRNATarget
Ll_transcript_155192; FTRINITY_DN56568_c5_g1_i2 1722 1741 GGTATCCATTGTTTATGGCA BLAST psRNATarget
Ll_transcript_220207; FTRINITY_DN56352_c0_g1_i20 151 170 TGTATCTGTCGTTTATAGCT BLAST psRNATarget
Ll_transcript_184994; FTRINITY_DN57451_c1_g2_i2 173 192 TGAGTCCAGCGTTTACGGCT BLAST psRNATarget
Ll_transcript_184984; FTRINITY_DN57451_c1_g2_i1 173 192 TGAGTCCAGCGTTTACGGCT BLAST psRNATarget
Ll_transcript_71373; FTRINITY_DN56053_c7_g2_i8 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_71359; FTRINITY_DN56053_c7_g2_i1 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_71369; FTRINITY_DN56053_c7_g2_i6 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_71360; FTRINITY_DN56053_c7_g2_i2 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_71363; FTRINITY_DN56053_c7_g2_i3 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_71365; FTRINITY_DN56053_c7_g2_i4 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_71367; FTRINITY_DN56053_c7_g2_i5 722 741 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_251272; FTRINITY_DN52596_c5_g2_i3 633 652 GGTGTTCACCGTTTACGGCG BLAST psRNATarget
Ll_transcript_251283; FTRINITY_DN52596_c5_g2_i8 633 652 GGTGTTCACCGTTTACGGCG BLAST psRNATarget
Ll_transcript_251279; FTRINITY_DN52596_c5_g2_i6 633 652 GGTGTTCACCGTTTACGGCG BLAST psRNATarget
Ll_transcript_237530; FTRINITY_DN54431_c2_g1_i1 1034 1053 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_237531; FTRINITY_DN54431_c2_g1_i2 1167 1186 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_237535; FTRINITY_DN54431_c2_g1_i6 1460 1479 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_237532; FTRINITY_DN54431_c2_g1_i3 1593 1612 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_237534; FTRINITY_DN54431_c2_g1_i5 1848 1867 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_237533; FTRINITY_DN54431_c2_g1_i4 2274 2293 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_197143; FTRINITY_DN54330_c1_g1_i2 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197153; FTRINITY_DN54330_c1_g1_i11 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197144; FTRINITY_DN54330_c1_g1_i3 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197147; FTRINITY_DN54330_c1_g1_i5 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197152; FTRINITY_DN54330_c1_g1_i10 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197148; FTRINITY_DN54330_c1_g1_i6 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197151; FTRINITY_DN54330_c1_g1_i9 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197146; FTRINITY_DN54330_c1_g1_i4 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_197142; FTRINITY_DN54330_c1_g1_i1 1543 1562 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_138870; FTRINITY_DN55254_c0_g2_i11 1231 1250 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_138861; FTRINITY_DN55254_c0_g2_i4 1341 1360 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_18654; FTRINITY_DN54512_c1_g4_i8 636 655 TATATTTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_138867; FTRINITY_DN55254_c0_g2_i8 1341 1360 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_138859; FTRINITY_DN55254_c0_g2_i2 1231 1250 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_138866; FTRINITY_DN55254_c0_g2_i7 1341 1360 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_138864; FTRINITY_DN55254_c0_g2_i6 2338 2357 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_138860; FTRINITY_DN55254_c0_g2_i3 2338 2357 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_108482; FTRINITY_DN50794_c0_g1_i4 289 308 GGTTTTCATCGTTTATGACT BLAST psRNATarget
Ll_transcript_154138; FTRINITY_DN56574_c0_g1_i13 364 383 GGTAATTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_154131; FTRINITY_DN56574_c0_g1_i6 364 383 GGTAATTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_154145; FTRINITY_DN56574_c0_g1_i20 364 383 GGTAATTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_45605; FTRINITY_DN70824_c0_g1_i1 153 172 TTTAGCTGTTGTTTACGGCT BLAST psRNATarget
Ll_transcript_91430; FTRINITY_DN53911_c0_g1_i11 517 536 CATCTTCATTGTTTACGGTT BLAST psRNATarget
Ll_transcript_91434; FTRINITY_DN53911_c0_g1_i13 718 737 CATCTTCATTGTTTACGGTT BLAST psRNATarget
Ll_transcript_91421; FTRINITY_DN53911_c0_g1_i3 724 743 CATCTTCATTGTTTACGGTT BLAST psRNATarget
Ll_transcript_91427; FTRINITY_DN53911_c0_g1_i9 761 780 CATCTTCATTGTTTACGGTT BLAST psRNATarget
Ll_transcript_26657; FTRINITY_DN77616_c0_g1_i1 115 134 TGTTTCTATCCTTTACGGTT BLAST psRNATarget
Ll_transcript_310548; TRINITY_DN47172_c1_g4_i1 3163 3182 GGTATCCATTGTTTATGGCA BLAST psRNATarget
Ll_transcript_370853; TRINITY_DN47086_c0_g3_i1 271 290 TGTATCTGTCGTTTATAGCT BLAST psRNATarget
Ll_transcript_293307; TRINITY_DN49105_c4_g5_i1 351 370 TGAGTCCAGCGTTTACGGCT BLAST psRNATarget
Ll_transcript_343316; TRINITY_DN49870_c1_g3_i4 791 810 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_343316; TRINITY_DN49870_c1_g3_i4 1095 1114 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_343327; TRINITY_DN49870_c1_g3_i11 791 810 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_343309; TRINITY_DN49870_c1_g3_i1 791 810 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_343317; TRINITY_DN49870_c1_g3_i5 791 810 TGCATTCATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_442559; TRINITY_DN47869_c0_g4_i5 658 677 GGTGTTCACCGTTTACGGCG BLAST psRNATarget
Ll_transcript_357240; TRINITY_DN13836_c0_g1_i1 56 75 GGTGTTTACTGTTTACGGCT BLAST psRNATarget
Ll_transcript_476483; TRINITY_DN47428_c3_g2_i3 359 378 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_476477; TRINITY_DN47428_c3_g2_i1 598 617 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_476479; TRINITY_DN47428_c3_g2_i2 940 959 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_476494; TRINITY_DN47428_c3_g2_i5 1123 1142 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_476488; TRINITY_DN47428_c3_g2_i4 1804 1823 AGTGTTGATTGTTTGTGGCT BLAST psRNATarget
Ll_transcript_357518; TRINITY_DN45141_c0_g1_i6 1168 1187 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_357516; TRINITY_DN45141_c0_g1_i4 1168 1187 GAAATCCGTTGTTTGCGGCT BLAST psRNATarget
Ll_transcript_507197; TRINITY_DN52541_c0_g1_i1 325 344 TATATTTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_326635; TRINITY_DN48051_c1_g1_i2 1287 1306 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_326660; TRINITY_DN48051_c1_g1_i12 1287 1306 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_326641; TRINITY_DN48051_c1_g1_i4 1491 1510 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_326656; TRINITY_DN48051_c1_g1_i10 1491 1510 CATATTCATCTTTTACGGTT BLAST psRNATarget
Ll_transcript_425144; TRINITY_DN65663_c0_g1_i1 59 78 GAAACTCATCGTTTACGGCT BLAST psRNATarget
Ll_transcript_471728; TRINITY_DN52001_c0_g3_i1 11 30 GGTTTTCATCGTTTATGACT BLAST psRNATarget
Ll_transcript_354248; TRINITY_DN49491_c1_g1_i19 364 383 GGTAATTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_354238; TRINITY_DN49491_c1_g1_i11 456 475 GGTAATTATTGTTTATGGTT BLAST psRNATarget
Ll_transcript_526630; TRINITY_DN47530_c1_g1_i2 500 519 CATCTTCATTGTTTACGGTT BLAST psRNATarget
Ll_transcript_395032; TRINITY_DN71959_c0_g1_i1 48 67 TGTTTCTATCCTTTACGGTT BLAST psRNATarget

Expression of miRNA 42


Labels

FPAB_1 abscising flower pedicels (replicate 1)      PAB_1 abscising pods (replicate 1)      PW2_1   pods wall stages 4-6 (replicate 1)
FPAB_2 abscising flower pedicels (replicate 2)      PAB_2 abscising pods (replicate 2)      PW2_2   pods wall stages 4-6 (replicate 2)
FPNAB_1   non-abscising flower pedicels (replicate 1)        PNAB_1   non-abscising pods (replicate 1)        PW3_1   pods wall stages 7-8 (replicate 1)
FPNAB_2   non-abscising flower pedicels (replicate 2)        PNAB_2   non-abscising pods (replicate 2)        PW3_2   pods wall stages 7-8 (replicate 2)
LF1_1 lower flowers stage 1 (replicate 1)      PS1_1 seeds stages 1-3 (replicate 1)      UF1_1 upper flowers stage 1 (replicate 1)
LF1_2 lower flowers stage 1 (replicate 2)      PS1_2 seeds stages 1-3 (replicate 2)      UF1_2 upper flowers stage 1 (replicate 2)
LF2_1 lower flowers stage 2 (replicate 1)      PS2_1 seeds stages 4-6 (replicate 1)      UF2_1 upper flowers stage 2 (replicate 1)
LF2_2 lower flowers stage 2 (replicate 2)      PS2_2 seeds stages 4-6 (replicate 2)      UF2_2 upper flowers stage 2 (replicate 2)
LF3_1 lower flowers stage 3 (replicate 1)      PS3_1 seeds stages 7-8 (replicate 1)      UF3_1 upper flowers stage 3 (replicate 1)
LF3_2 lower flowers stage 3 (replicate 2)      PS3_2   seeds stages 7-8 (replicate 2)        UF3_2 upper flowers stage 3 (replicate 2)
LF4_1 lower flowers stage 4 (replicate 1)      PW1_1   pods wall stages 1-3 (replicate 1)        UF4_1 upper flowers stage 4 (replicate 1)
LF4_2 lower flowers stage 4 (replicate 2)      PW1_2   pods wall stages 1-3 (replicate 2)        UF4_2 upper flowers stage 4 (replicate 2)