| Id Trinity | FTRINITY_DN48351_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_176221 |
| Sequence | ATTTGGCATCATGAGCTCAGACTCTGCAGATCCCTTCTACTGGATTCGTGTAATCCTTGCCTCAAATCGTGGTACTTTGATGGAGTTGGGTATCTCTCCA ATTGTGACTTCAGGGTTGATCATGCAGCTCTTGGCTGGTGCCAAGATCATTGAAGTTGGTGACACCCCAAAAGACCGTGCTCTTTTCAATGGAGCCCAGA AATTGTTTGGTATGGTCATTACTGTTGGTCAAGCCATTGTCTATGTCATGACTGGCATGTACGGTGACCCCGCTGACATTGGTGCCGGTGTCTGCCTTCT CATCATCATCCAGCTGTTTGTTGCTGGTCTGATTGTGCTGCTCCTGGACGAACTACTGCAGAAGGGCTACGGTCTGGGCTCTGGTATTTCCCTCTTCATT GCTACAAACATCTGTGAAACAATTGTGTGGAAGGCATTCAGCCCTGCCACAATGAATGCTGGACGTGGTACTGAGTTTGAGGGAGCTGTCATTGCTCTTT TCCATCTTCTCGCTACACGTCAAGACAAAGTTCGCGCTCTGCGTGAAGCTTTCTACCGGCACAACCTCCCCAACTTGATGAACCTGATGGCTACCATCCT TGTCTTCGCTGTTGTTATCTACTTCCAGGGCTTCCGTGTGGACCTACCCATCAAGTCTGCTCGGTACCGTGGTCAGTACAGCAGCTACCCCATCAAGCTG TTCTACACCTCCAACATTCCCATTATCTTGCAGTCAGCCCTTGTTTCCAACCTCTACGTTATCTCTCAGATGCTGGCTGTTAAGTTCCATGGCAACTTCC TTGTGAACTTGCTCGGAGTGTGGGCCGATGTTGGAGGTGGCGGCCCCGCCCGTGCTTACCCTGTTGGCGGTCTTTGTTATTACTTGTCTCCTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_16949; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_176221
| Blastp | Protein transport protein Sec61 subunit alpha isoform 2 from Mus with 93.27% of identity |
|---|---|
| Blastx | Protein transport protein Sec61 subunit alpha isoform 2 from Mus with 93.27% of identity |
| Eggnog | The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (By similarity)(COG0201) |
| Kegg | Link to kegg annotations (57743) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413450.1) |
| Pfam | Plug domain of Sec61p (PF10559.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |