| Id Trinity | FTRINITY_DN51221_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_261897 |
| Sequence | AATAATTTTAATTAAAAAAAGCATGAAGACTCTGTTTTTCTTATTCTCTACTAGTATCTGCTTCTTCTCATGACTTTAGCTTTGATCAAAAAGTTTCTTA CTTGATCGTTTCCTACGCCATGATTCATTGATTTGTGGTTTCTCCTCCCTTATACATTATAAAGTTTGAAACTTTCCATCATCATTGTTCAGAATTTAAA CATGGGTTCATCGGAGATTGATCAAAACGTTTCTCAATCTCTTTCTTCAAACAATCCCAACCCCATTGACCCTAGAAGTTATCAATTGGAGGTGTTTGAA GTTGCAAAGAAGAGGAATACAATAGCAGTGTTGGATACAGGTTCTGGTAAAACTTTGGTAGCAGTGATGCTCATAAAAGAAGCTTATAAAGCTATCAAGT CTAGTCACATTAAAAAGTTGATTATTTTCTTAGCTCCCACTGTTAATCTTGTCAACCAGGCTTGTTCCCTAAATTTTTCGTTTTTTTCGGCTTTTGATTC CTTTTAGTTTCATTTACATGTCGAATCTAAATGGTGTCTGTGGTTTCATTTTGCAGCAATTTAAACATATAAAAGATCTTACAGGTTTTAAAGTCGAAGA GTACTACGGGGCTAAGGGAGTGGATACATGGGATTTGAAAATCTGGGAGAAGGAGATTAGTGAAAATGATGTACTGGTTATGACACCCCAGATTCTTTTG GATGCTTTAAGAAAGGCATTCTTAAGTATAGAAATGATATGCTTGATGATTATGGATGAATGTCATAGAGCAACCGGCAAACATCCCTATTCAAAAATAA TGGAAGAGTTCTATCACAAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTAGGTAAAAAAGTCGGTGTTTCCTCTACCAAGGGTTG TGAGGGTCAAATATCAGAACTTGAATACATCTTGGATTCTCGGGTAAAATATTTTCTTCATGTTGACTCATTTCTTTTCACGAGAGCACATGTGAAAAAC TATGTTTATACCAACTGGATTTGTCTCTGTAGAGATATACTGTTGAAGATAGGAAAGAAATAGATATACATATCCCTTCTGCAAAAGAGAGTTGTAGATA TTATGACCAAGCACAATACCCTGTGTTGAGGTTGAAGTTAAAGATTGAAGCCTTGTTCGAGTCCAATGCATTGTTCTCAGAATTGCGAAGTTTGGCGCAA AGTGAGGATGTGGATTATAAATTTAAGAAACTGCATAATGGGATGTTCAATAAACTTGAAAAAATCTTATATTGCCTTGAAGACCTTGGATCCATATGTG CTTATGAGGCTGCACAAATGTATCACGAAAGTTTCTCCAAAATTATAGGAGGCTGTGAAGTTTACAGAAATGCTTCTCTCAAATGTAAATTTTTTATGGA AAAAGTAATGCAATTAATTGAAGAATCCCTCCATCTCGATGACAAAAAGAATTCGGAGGTTGAATTTGATTATTCAAAGGCAGTAGAGTTGAGACACATA TCTCCAAAATTACTTGAACTTATTAAAATCTTCCAGTCACTTGGAGAATCTAGTCAGATGTCGTGTCTCATTTTTGTTGAAAGAAAACTTACAGCTAAGT TAATGGAAAAATTTGTAAAGAAAGTATCCCATATATCTCATTTCACAGTTTCCTATATAACCGGAGGCAATACTGCAGTTGATGCGCTGTCTCCTAAGAA GCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAGGGGTATTTGGTCATTGCATCATATGCTATGAAACAAGTCCTGATGAAAATCTCTTGATAGGTTAT TAATCCTTTTTATGTAGGTCAATCTATTAATTACTACTGATGTAGCTGAGGAAGGAATTGATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTACC CAAGACAGTTCGTAGTTATGTCCAATCTCGGGGAAGATGTAGGCAGCCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAAT CAACTTTTTGACATCATCAGGAGTGAGCGCTCCATGACTAATGCAGCTACTAATAAAGACCAGAATGCTTCTAATTTAAGGGTGTTTACTGTAGGGAAAA CAAATGCATACCATGTGAATTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTGGACTTATAAATCGATACTGTGAAAAGCTACCACATGATAAGTA CTCCCGTGTGAAGCCCACTTTTGAGTTTCAGCCTATGGGAGGGGGTTACGCATGTAAGTTAACATTGCCGCCTAATGCAGCTTTCCAAATAATAGTTGGT CCCTCAGGAAAAGATGTTCATTTGGCAAGGCATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGATCATCTTGTCCCTC TCATTAAAGAAGAGCCTTTAGAAACTGATTGTATTGTGAAAAACAAAGAATCAAGTTCAGGTCCAGGAAGTGGAACCACAAAAAGAAAGGAGTTACATGG CACAACCAGCATTCGTGCGTTATGTGGTACATGGGGAGACAAACTTGATGACACGAAATTTCATGCCTATAAGTTTGATTTCACATGTAATATTGTCAGT GAAATTTACTCCGGGTTTGTTCTTCTGGTTGAGTCAAAGCTTGATGATGATGTGGGAAATATGGAGGTAGATCTTTATTTAATCTCAAAGATGGTGAAGG CTTCTGTCTATTCACGTGGGCAAGTTGACCTGGATGCTGAACAGATGATGAATGCTAAATGCTTCCAAGAGTTTTTTTTCAATGGTTTGTTTGGGAGGTT GGTTCTTCGGTCTAAATCAGCAGCAAGGGGAGGAAGGGAGTTTTTACTTCAAAAAGACACAAATACGTTATGGAACCCAACATACATGTTTTTGCTTCTA CCACTTGAGAAACTGAATGATTCATGTATGGGATCATTGACAATAAATTGGTCTGGAATCAAATCTTGTGCTTCTGCTATTGGGTTTTTAAGGAAGAAGT TTTTGTTGGTTGCTGGAGATTGTTGCAATGATAGTGATGACACAAAAATCACGTCACCTTGTGATACCAGTCCAATGGAGGTGGAAAGTCAAGATAAAAA TAACATTTACTTTGCTAATTGTATGCTTGATGTTAATAATCTAAAAGACGTGGTAGTTTTGGCCATTCATACTGGCAGAATCTATTGTATTGTTGAATTA GATATCAACCTATCCGCTGAAAGTCCCTTCGATGGCAACGATGAAAAGTCTGGGGGTGAACAAATAACATTCGCAGATTACTACAAAAAAAGGTATGGCA TTACGCTGAGACATCCAGGGCAACATTTGTTACGTTTGAAGCAAAGTCATAATGCACACAATCTTCTTTTGAACTTCCACGAGGAAGATGGTCGGGACAA GGCATCACAAACTGGGCAGGCACAATCAAAGATGCCTGCCCATGTTTACATTCCACCTGAGCTTCTCTATGTTCTTGATGTTAAAAGAGACGTTTTGAGG TCAATGTACTTGCTACCATCACTGATGCATCATCTTCAATCGTTCATGTTATCCAGTCAGCTTAGAGAAGAGATAGGTGGCCAAACTAACAATTTCAACA TTCCTAGCGCTCTGGTTTGTCCTATATAGTCCAATTATGTGGATAAGATACTTCGTTTATTTTCCGTGTTCATTATGATAATCTTATGCTTCTTTCCTTT TTACCTAAGTTAGATTCTAGAAGCACTTACAACTTTAAGATGTGCTGAAAAATGTTCAATGGAACGTCTTGAGTTACTTGGAGATTCTGTTCTAAAATAT GCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGGCATGCGATCACTGGCTGTCTGTAATTCAACCCTACATAAAC GGGCAACAGATCACAAACTGCAGGAGTATATCCGAGACTCAGCATTTGAGCCACGCCGTTGGGTTGCTCCAGGACAGATATCTATACACCCCGTTTGTTG TGAATGTGGGTTGGAAACACAAGAAGTGCCTTTAGATGGAAAGTTCCATACTGAAGATCCGAAAGTTGTGGTTGGGAAGTTATGTGACAAGGGTCACCGC TGGATGTGTTCAAAGACCATTGCTGATTGTGCTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGATTAATTGCTGCACTTCACGTGATGAAGTGGC TTGGGATTGATGCTGAACTTGAACCTTCTTTGGTTGATGAAGCCATAACTGCTGCGTCTCTCCATGCATATGTGCCAAAAGTTGAAGAGATTGGAAGCCT TGAAATGAAAATTGGCTATGAATTTTCCATCAAGGGACTCTTACTGGAGGCAATGACACATGTATCCGGGAAAGAAGTTGGGATTAGCTGCTGTTATGAG AGGCTTGAATTTCTTGGTGACTCAGTACTGGACCTGCTTATCACACGCCATCTTTATCAGAGCCACACAGATATTGATCCAGGAGAATTGACTGACTTGC GTTCAGCTTCTGTCAGTAATGAAAATTTTGCTCAAGTTGCTGTAAGAAGAAACCTTCATCTGCACCTTTTGCATGGCTCAGAATTATTGCTGAGCCAGAT CGCAGATTATGTAAAAGTCATTTCTGAATCAGAGAACAATACTAGATCATTCCAAGGCATTAGAGCTCCCAAGCCACTTGGAGATCTAGTCGAAAGTATT GCTGGGGCTATGCTAATTGATACCAAGCTCAATGTTGACCAAGTGTGGAAAGTTTTCAACCCTTTGCTATCTCCAATTGTTACACCTGATAAACTTGAAC TGCCTCCGTGGCGTGAATTAAATGAATTATGTGACTCTCTCCGGTGTTTTGTGAAAGAAAGTTGTGTAAAGAAAGGACCCATGGTGCATGCCACCCTTAG TGTGCAGTTGCATGATACCTTGTTGGTTCGAGAGGGAAAGGGGCAAAATGCAAAAACTGCAAAAGGAGATGCCGCTCTTCATTTGTTAAAGGACCTTGAG AAGAGAGGAATTTCATATAGCAGTAGCGTCTCAAAGAGAAAACGAGATGCTTCTGGTCTTACTGATGAAAACTCCCTGAAGCCAGTTGCACAGTTAGAAT ATAAAAGGCAGAAAGTGGATGAAACTAACTTAACTGCGAATGCACATACTGGTTTGCTGCCTCTCAAAGACACTTCCATGGAAGCCTCTAACCTTGGTGC TTCTGTTCCAG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_21612; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_261897
| Blastp | Endoribonuclease Dicer homolog 3 from Arabidopsis with 60.61% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 3b from Oryza sativa with 50.83% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G43920) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435266.1) |
| Pfam | Ribonuclease III domain (PF00636.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |