| Id Trinity | FTRINITY_DN51811_c0_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_187301 |
| Sequence | ATACATGATTTAACATATTAATTAGATAAATGTTAGTAGTTTATTCCATTTATAACAAATCATGCTTACTTTTAAACCAGTATTTCTCTTTCGATTTAAG ACTGGTGCTTTTATATTAATTTTATATATTTTATCATAGTTGTGTTGTGTCATATAAAATGACAGTCCATAGAATGTGGAAGCCTCCCACCTGGTGGGGT CTACGGAGGATATGTTTCTACCGTCTTACTCCCAAACTTAACATTGATTTCTATTCATGACCCACTTTGTATCAATGCTTACTAGACTACCATCATACTA TGATGCTTCTGAATTGCTGCAGCAGTTGAAAAATGTCAATGAATTAAATAAAATGACATTGCTTGATTTTCTTTCTTAATTCGTTTTTATGGCAAGATGT GATTTTTTCTGGCAGTATTGCCTGCCATTCGCAACGTTAATAATCCGGGTAGAGGGGGTTTTGGTCGTGGTCGATGGCAGCCCGGACATCAAAATGATAG GGGAGCAGGCCTTCTTCCTCGTCCTGGACCATATCCGCACAGACAAAACTTTGGGTATGGTAACAGGTTTCAGAATGGCCATCGTGATGAACGATTTGTA TCTGATATGAAGCTTACCAAGAGTGAAGAGACTCTGTCAAGGAAGTGCATTGCTTTTCAAGAGCCATGTGAAATTGGCTGCTATAGTCGGGTAGAAGGCG GGCAAGTATATTTTGACGATCGTAGCTTGAGGCTTTTTAAGCGCCTTATAACTGAAGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATTTGTACC TAAAAAAGACTTAGGCTCAGAGGGCTTCGGCGATCTTCTTGCTTGTATTAGAGATAAAAATATCCCCCTTCAAAATATTCATTTTGTGACATATCGTAAC AATCTTAATAAGATACTTGCTACAGCTTATGCCCGTCACGAGCCTTGGGAAATGGGGGTGCACAAAAGGAATGGTGTTGTCTATCTTGATGTGCATAGCC TACCAGAGAGACCACAAAGGGATATTGACCGCAGGAGATGTTATTGGGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATCGAGCTGTTGGAGA GGGGATACATCATGTTGATGCAAATGTTGAATTCTGTTCTTTGATTAAGACAAAATTAGGGGCTCACCGTATCTTGATGGGTGCTGAGATGGATTGCTGT GATTCGACTGATGATGGAAAGAGGTTTTATGTGGAGTTAAAGACAAGTCGTGAGTTGGATTATCATACTGAGGAAAGATTTGAGAGGGAGAAACTACTAA AGTATTGGATTCAATCATTCCTGGCTGGTGTCCCATATATTGTCATAGGGTTTAGGGATGACGGTGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAA AGATATAACACAGAGGGTAAAAACAAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCATTTGCTGATGAAGTGTTATGCTGGCTTTATGGAACCGTCAAA GAAAATGAAGATTACATATTGCAGTTTGCCCCACCTTTCAATCGTTTGGAACTTTTGCAAGGACAATCATGCCCAGATGTAATTACTAGTCATCTGGATC TTTTGTAAACAACTATTTGAAACTTAACTATTATTTAAACAATGGAAGAGGGAATCAAATTGGGATTCCCCTGTAGCTTTAATTAGGACTTGAACAACGA GGATATTTTGGTACTCTACGTGATTACTGAGACATTTTAATATAAAAACTTGCGGAAAATATTATGCTGTTGTTATTTTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_22942; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_187301
| Blastp | Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 79.28% of identity |
|---|---|
| Blastx | Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 74.81% of identity |
| Eggnog | Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5' end cap mRNAs such as unmethylated 5' end-capped RNA to release GpppN and 5' end monophosphate RNA. Also possesses RNA 5'-pyrophosphohydrolase activity by hydrolyzing the 5' end triphosphate to release pyrophosphates(ENOG410ZAFR) |
| Kegg | Link to kegg annotations (AT4G17620) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422194.1) |
| Pfam | RAI1 like PD-(D/E)XK nuclease (PF08652.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |