| Id Trinity | FTRINITY_DN52289_c3_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_29177 |
| Sequence | AGCGAAGGGTGTGTGGATAGCAGTAATCTTCACTAGTTGTAAAATTGTAAGAGATTCATTGCTATACGGAAAATAACGCATAAATAAAACATTTTTTCAT TTTCAAAATTTCATTTTATTTCTAAAATCTCAATCTCGTGTCTTCCATTTCACCATCGAATCGAGGGATACAGCAAAAACGGCGATCCAATCCAGCGTTT CTTTTTCACCGAAATCGAAACGCTGTTTCCGAGCATCACTTTCCTTCAGCTATTGTTCCTCGTCAATTCCCAATATTGGAAGGTTTTAATTGTTGATTCT GGTCTAATCAACTTGTGGAGTTTTAATTCAAGTTCCAAACATATAGAGCCATGAGTTTTGTTTTTGGAGGAACAAGAGCAGATATAGAAAATGGATTTCC AGGATTTATACCTCAGAGGCGTACATTGCGTGTTCATGCTGCACGTCCGAGTAATTCCAATTCTCTCACTTTTCTTGTAACAGTTCTCCTGTTATTCATG ATACTGAACTCTCAACAAATGTCACCAAATTTCATGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCGACATTTCAAC AGCTTCAAGCGCAGGCCCAAGCTCATGCCGCAACAGCCAATGGCCTTCTTGGACACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTCACAAG CCGAGGGCGGCTGCAAGGCCTCAGACTTCAGCTTGCACTTCTTGATCGAGAGTTCGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAAT GTTTCTTCTGGATCTTCAATGACTGAGGAAGAGATCAATGCTCTTCCTGTCCACAAATACAAGGGTTCTGGTCCCCAAAGCAGTAGTTCCTCAATGCAAC AAGCTTCATCTTCCACATCTGCCGAGGTATTAACTTCATCCTTGGTTATTTGTTTTCCCATTTGACATAAAGAAGTAAATTACACTGCATCTTATGGGAA CTCCAGTTCTCTCTTTAGGCCTTGAGGGTATTGCCTTCTGCATGTTTTTCCAGTGATTTTCTTGCACTATTCCTGACATTATGGTGAAGTGCTGATACTT GTCAAACTACATTTTATATGTGATGACTGTGAATCTGTGCTATAAATATTCAGCAGTACAGCATATTTATCCTGGACCTGGTTGAGTACTTCAAAATTTG GCAATAACATTTATATTAGAGTAAATTACATTGACATCTTTGAGATTTAGTCAAACTACACATGTCACCCCTCCCTTTCTTACTCCTACACAAACATCCT TTAATTTATGTGCATCCATTACGCCCTGTACCCCAACCAGGGACGGTGAGTGTAATGTTTGTAATGAATCTAATTTACTTTATGTATTATTTTCTTGAAT ATCTTATCATTTACATCCATTGATCCACCATTGTATATTCATATAAATTCACTGGAACTGTCCACTGTCTGATGTTTTCATGGGACTGTTAAATAACAGA AAGGATCGCCAGACATTTACATAGTTAATCTTTTCTTGTTGTGCTTGTAAGTTTTCATATTTTAAGCTGTTATTGTGGAGTGGTCGGTATTTCGTACGAA TAATTTATTGGTTTTTTGTGTGGCAGAAGAAGCAAGATCATTCAAACGCAACTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGCGTATGTTT GGAGCAAGTTAATGTTGGAGATATACTCCGTAGCTTGCCCTGCTTGCATCAGGTTAGTTATATATTCTAGGAAGTGAAAATGCCAGTTTCACCCTTATTT AGCTTGCCCTGCTTGCCTTAAGTTATTAAACCCAAATATTTTGGGTTTTTAGTAAAGTAAATATTGGTGCAAGTTGGGTTGGAAACAATCCGAACCTGGA TTCAACTCGATAAGAATCGGCTTAACTTGAAACTCGACTCGAGGCCGATATCAATTATTTTTCAGCTCGAACTAGACTTTGAGTTCGTGAACTGGTCAAC TCATTAGCTTGAGTTGGTTTAGTTCGTTGGGAGATTGTGAACTGTTTACTTCAACTCATTATTTTGATTGGTTCATTTCATCAGTTCGAATGATGATTAT TTATTTAAGATATTAAATTTAAAGATTGTATATACAATCAAGCTAGTTCATGAGTCTAACGAGTTGAACTGTAATTGGCTCAAGTTCTGCTAGTTTATTT AATGAACTCAATTTTTAGCTCAAGTTCAATTCATTTGGTTAATGAACGAAGCTTATCGAGTTAAATAACAAGTCGAGTTTCAAACGAATGACGAGTTGAT TCAGTTTATTATCAGTCCTAGTGGAAGCATGCATATGCATATGCTAATGAACCAATTATTGACTATTATTTGAAGGACTTGAGTAATCCTAAAGTTTGTC TGAAACGTTGGGGACTTGGGGTTGATTTTATGTTTTTATTTATCAATCTAATGTGATACTGAGACCTCGTTTATGTGTTTTGAAGTTTCACGCTAACTGC ATTGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTCCGAGCAGGATCTGGATGGAATGAAAATGGGCATGAGGATATTGCGGACATGG TTTGAATACCTCTATTTTGTATTTATATGCGTGTGATTATAATATGGTATAGACTGTAGCTTTAACTTACCCTCGTCATGTATAAAAACCGTGGCTTATG ACTAGTATTTGGGTAATTAGCCTGACATAGGAATGACAGAAATACCATGTAAAAACTACAGAAGTTCACAGATTTTTTCCCCTATTGTAAGGACCAAGTT TCTTGGGCCATTCTAAAAGTATATAGTATATGTTGTAACTATAGGTACTTAAAAGTATATCGTTTCAATTTGTACTTAAAAATATATGTTCCAACAATCC TTGCCATACACTTAAGAGAGTGCTGGGAAGTTTGTAAGGAAATGAAAGGAAAGGCATGGTATGGAATTAGGAGGAAGAAAAGGAAGTACTTGCGAGATAG GGAAGGGAGATTGAGATTTTATATCCCATGTTTAGATGTATAAATTTTATAAGGTGAAGAAAGTGGAAGGTTATTTGAGATGTTTTATTTCAGCATCCGC AAGGGTCATACCATGTCATCATCACTCATCAACTAAGCATGAGAAATCACCTTTTTAAACTGCTATCAATGGTCGCAATTTGCCACTAGCGTCGCTAATG TCGGTGGCTATTTGATACATTTTTTGTAGGAATGTTTTAATAACATTAAATGAAATAAGTCAATTAAGAAACGTGCAATGTTTACTCTAGAAAGTAATTT CAAGAGAAAGTTGACAGAGCTATTATGCACATTCACAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_24654; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_29177
| Blastp | E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 75.76% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 81.4% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | Link to kegg annotations (AT3G55530) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439461.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |