| Id Trinity | FTRINITY_DN52855_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_234413 |
| Sequence | CTTGGATCTTGGAGAATCAAGCATTCGTTCCGTTGCTGTATTCTGTTGCTTTTCGCTGATAGCCCCTATCCGATTTGAGTCGCGATGGCACGTACTAAGC AGACTGCCCGTAAATCCACGGGAGGAAAGGCTCCTCGTAAGCAGCTGGCCACCAAGGCTGCACGTAAGAGTGCCCCATCCACTGGAGGAGTCAAGAAACC TCACCGTTACAGGCCCGGTACCGTCGCCCTCCGAGAAATCAGGCGTTACCAGAAGTCTACTGAGTTGCTGATCCGCAAGCTGCCTTTCCAGCGACTTGTT CGTGAAATTGCTCAGGACTTCAAAACTGACCTTCGTTTCCAGAGTGCTGCTATTGGTGCTCTTCAGGAAGCCAGTGAGGCTTACTTGGTTGGCTTGTTTG AAGACACCAACTTGTGTGCCATTCACGCCAAGCGTGTAACCATCATGCCGAAAGACATCCAGTTGGCGCGGCGAATTCGTGGTGAACGTGCTTAAGTTAC TGGCAGCTTTTTTTTAATTTGGTTTTATATCACCTTTTGGGATGATAATTGTCGACAGTGGGTGACAACTCCCAGGACTCTGTCTTCTTAGCTAAATCAG ACAACTACTTTCACTGCCAGGGAGTTGAGATAGAGAATGTCGAGGATTAATGATGTTTGGTTTTTAAGACTGGATTCAATTCTTACCTTTCAGTGTGTAT TGTAGTGTGTGTTCAGTTTTAAGTGCTTCTTTGTCACCTTTAACTGAGGCCAATACATTTATTGTGCTTTGCCCATGAAATTTTTCATTTTTGACATGTT TAAACTAAACAAACCTGGTTTCTTATCTGAAGTCCATGATTGGCATTGAGACTTACAAGCAATTTAACTCGTGGGCTAGTGTGCACATGATAAATTTATT TGCTGTAGATGTTGCACTTATTTCCATTTCGGGCAAAGGGCCGTATAATTTGCATGTTTAGCTGATAGAACAATTTGATCTTTCTTATCGTATCCTTTTA TTGTTATAAGTTCTGTCAAACATTTTGTATAGAAATGTTAGTGGTGCATTACACATGTTGCTCTGATGCGACACATTTTATTTAATTAAACTTAGGTTAC CTTATTCCAAATGTTTTTTTTTATTCCTCCTTTGATAAGTCCCCCCCACCCCCCTTAAATCTTTTGGTGATGGCCCTTCTTAGTGACTCTGTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_28618; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_234413
| Blastp | Histone H3.3 from Silurana with 100% of identity |
|---|---|
| Blastx | Histone H3.3 from Silurana with 100% of identity |
| Eggnog | Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling(COG2036) |
| Kegg | Link to kegg annotations (100038101) |
| CantataDB | Link to cantataDB annotations (CNT0000247) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435472.1) |
| Pfam | Core histone H2A/H2B/H3/H4 (PF00125.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |