Ll_transcript_241041

• Id Trinity: FTRINITY_DN53032_c3_g3_i2
• Name Transcript: Ll_transcript_241041
• Sequence: GAAGGATAATAAAGCCTTGTTTCTTCTTCATCAATGTGTTGATGACATACACTTTGAGAAGATTCAACAAGCAACCAATGCAAAAGATGCATGGGATGTC TTGATTAGAAGTCATTCTGGAGGAGACAAAATTAAGAAAGTGAAGTTACAAGCATTGAGGAGACAATATGAAAATCTTCACATGGAAGAGAATGATAGAG TAGGTGCATACTTCACAAAGGTACTTACTCTATCTAATCAAATGAAGGGATGTGGTGAATCAGTCTCTGATCTCATGATAATTGAAAAAATCATGAGATC ACTGCCACCAAAATTCGATTTCATTGTTGTTGCCATAGAGGAATCGAAGGATGTGAATAGCATGAGGATAGAAGAGCTCCAAAGTTCCTTAGAGGCTCAT GAGCTAAGGCTTCTTGAAAGAAATCCTATTAGAAACAATGAGCAGGCCCTAAAAACCACTCATAGCAGAGATGAAGAGAGTAGAAGAAGCAACAAATGGA AAGGAAAGTATGACAGAAGTGACTCAGAAGTGGCACAATCCTCAGACAAAAGGGGATGGATGAAGAAAAATCCAAAGCAAAAGAAACCTGATAGAAAGAA AGTGGAGTGTTACAACTGTCACAAATTTGGTCACTATTCCTATGAGTGCCTTGCTGAGAAAGCAAAGAAACACAATGACAAAGAAGCATACATAGCTCAA GATGGAGGAGAAGAGGAATCCTTGACACTCATGGTCACAAGTTCTGCAGAACACAACCATGGATCTTGGTATCTTGATTCAGGCTGTTCAAATCATATGA CAAGCCACAAAGAGTGGCTCACTGATCTTGACTCAAGCAAGAAAAGCAAAGTCAAGTTTTCAGATGATAGCACACTAAAGGTGGAAGGCAGTGGTGATGT TGTGATTCTGAGGAAGAATGGCTCAAAAGCAGTGATCTCTGATGTATTGTTCATTCCAGGGTTGAAATGTAATCTTCTGAGCATTGGGCAGCTTGTACAG AAAGGATTCACAGTGGTGATGAAGGATGATCAGTGTGAACTTTTTGATGCACAAAACAAGCTCATATTGAGGAGTGGCTTGACCAAGAATAGAAAATTTC AGGTGAACTTTGATGCAGCTCAGATTCAATGCAATGCAACATTTCAGTCAATGGAAGAGAGTTGGTTGTGGCATTATAGGTATGGACACCTGAATTTCAA GAGCCTGCAACAACTTGGATCAGAAAGCATGGTGCAAGGAATACCAAGAACTACAATGCCTAAGCAGATGTGTGAAGTATGCCTAGCTAGTAAACAAGCC AGAAGGCCTTTTAAGAATCATCTGCATATGAGGGCTAAAGGAATCCTAGATGTTGTGCACTCAGACATTTGTGGTCCATTTGAGGAACCTTCATTAGCAG GTAATAGATACTTCATTACCTTTGTTGATGAGTTTAGTAGAATGCTTTGGCTCTATGTGTTGAAACAGAAAAGTCAGGCTTTTGAAACCTTCCTGAAGTT CAAGGCTTCTATTGAAAAGGAAAGTGGCAGAGAGCTAAAAGTGCTAAGGACTGATGGTGGAGGTGAATTCATATCTAATGCATTCAAGTCACATTGTGAG GAGAATGGTATTAGGCATGAAATCACTGCTCCCTATACACCTCAGCATAATGGCTTGGCTGAGAGAAGAAACAGGTCAATAATGAACACAACAAGGAGTC TATTGAAAGAGAAGGGCCTGCCACAGAAATTCTGGGGTGAAGCAGTGTCAACTTCATCCTATATACTCAACAGAAGTCCAACAAAGCAGCTAAATGGTAA AGTACCAATTGAGGTTTGGTCTGGACAGAAACCTAGTGTGAGCCATCTGAAAATATTTGGGTCATTAGCTTTCAAGCATGTCCTGATCAGACTAGAACCA AGTTGCAAGACAAGAGTGAAGCTATGGTACTCATTGGATACCATCCAACAGGTGCCTACAAACTCTACAATCCAATCAAGGATTGTGTGCAAATTAGCAG AGATGTCATAGTCTTAGAGGATGAAAGCTGGATTTGGGCAGAAAACAAGACTAGTCTTAACAAACCAGTGCCTGAAATTGATGATGCTGCAACCAACACA GTTGATGCTGCAGCAACAACAACTGATAATGAGCCAACCATTGAAACTTCAATAAGTGAAACTCAGAATGCTCAAAGATCACAGAGAATGAGATCAAGAC CAGCAAGATTTAATGACTATGAGCTACATCTTGACAATGAAATCAGTGATGAAGGGGAATTGGTACACTTTGCTCTCATGGCTCTCTTGGCAGAAGCAGA ACCAATTAATGAGAAAGATGCCTTGCAAAACTCAGTATGGAAGAGAGCAATGGATGAAGAAATCAAGTCCATAGAGAAAAACAACACTTGGAATCTGGTT GAATTACCACTTGACAAACATAAAATTGGAGTCAAGTGGGTGTTCAAGCAAAAATTCAACCCTGATGGATCTATATCCAAGTACAAGGCAAGATTGGTGG CAAAGGGCTTTCTACAAAAGGAAGGGCTAGACTACACTGAAGTGTTTGCACCTGTAGCCAGGATTGAAACAATCAGATTAGTCATTAGCATGGCTTGTGC AAAAGAACGGCAGATGTTTCAACTTGATGTTAAATCTGCCTTCTTGCATGGTCCTCTTCAAGAAGAAGTATATGTCCAGCAGCCTCCTGGATACATCATT GAAGGGAAAGAACATCTTGTCTACAAGTTGAGTAAGGCACTATATGGACTCAAGCAAGCTCCAAGAGCCTGGAACAAGAGAATAGATTCATTTCTCTTTA AACAGCAATTTGAAAAATGTGAAGTAGAGCATGGTGTGTATGTTAAAGAGAGCAGAGATGGGAATCTAGTAATCATTTGCTTGTATGTGGATGACCTATT AATCACAGGGTCAAATCCAAGAGGAATTGCAGAAGTAAAAAGGGTGTTAGAGGCAGAATTTGAAATGACAGATCTTGGCAAGTTGAGCTATTTTCTTGGC ATGGAATTCTCCTACACCCCTACTGGTTTGTTGATGCATCAAAGCAAGTATGCTAAGGAATTGTTGATCAAGTACAACATGAATTCGTGCAATCCAGTCT CAAGTCCAGTAGAAACAAACTTAAGGCTTACCAATGATGAAGGTGGTGAAGCAGTTGATGCCACACAATGCAAGCAAATAGTAGGATCATTGAGGTTCTT ATGCAACACAAGACCTGATCTTATCTATGGGGTAGGACTGGTTAGCAGATTCATGAGCAATCCCAAGAAGTCTCATATGCTGGCAGCAAAAAGATTGTTG AGATATGTGAAAGGAACAACAGATTTTGGTGTATTGTTTCCACTGAAATTGCAGAAACCAGAGCTGGAACTAACTGGATATGCAGACTCTGATTTTGGAG GTGATTTGGTTGAGAGAAAGAGTACTTCTGGATACTTATTTTTGCTAAATGGTGCAGCTGTTTCTTGGTGTTCTAAAAAGCAACCAGTGATAGCTTTGTC TAACTGTGAGGCAGAATACATTTCAAGTAGTTATGCAGCATGCCAAGCAGTTTGGCTTGAAGAATTGATCAAGGAGATGAAGATCAAAATCAGATCACCA TTGCAGCTAAAAGTTGATAACATTTCAGCCATAAGCTTGTCCAAAAATCCAGTAAGTCATGGTAGGAGCAAGCACATAGAAGTTAGATTTCATTTTCTTA GAAATCTAGTGAACAAGGAAAGGTTGAGATTTGAGTATTGCAAGACTGAATTTCAGTTTGCTGATGCTTTCACCAAGGCATTAAAGAGCATCAGACTTGA AGAGTTAAGGAAGAAGATTGGTATGGCATCACTTAAGGAACTTGGCTTAAGGGAGGATGTTATAATATAATCCAAGTTTTGTGTAAATAGGAGTTAGTTT GCTTAACTAATAGTTTCCAATTTTAGCATGTGTTCAATTTGAAATTCTGTTTTGTTAGTTAGGAAGCTTCTATATAAGGAAAACTTTGTTTATTCATTTC TCAATAAAGCAAAGAGGCATTATTCAATACACATCTTCTTCTCCATTCTCTATTCTCTTCTTTTCTTTTTTGTTCCAACACTTATAAGAAGGTGAGCGTC AACATAAAGGTGAGGTTGTTACCTTATGGCATGGAGATAGAGGTGGCAATTTGGGCTGCCCAGCTGAGTTCGACATGGCCCATTTCTGGCTTGTCCTTGA TCGAACCAGGCCCAAAATGCTCAGGGTTATTCGGGTTTAAAAAACTAGTGATTAAACCCAATAGCAGCCAAAAAATAACTAATTTTAACAAATTTGGATG GGCTTTTAATGGTCTGACCTGGTTATGGCCAGCATGAACTAGGCTGAAATGACCCAGGGTCTATTCAGGAGGGCTGTAATGTAGCTAAACCTGCCCATTT ATCAGATGGCTCAATCCGGCCCATGTTGCTAGCTCTACTTGGTAGTAATGAGTTCAAATCTTAGAAACAAC
• Tissue: flowers
• Gene name: LI_gene_30165;
• Additional information: details;

Expression of Ll_transcript_241041

FPKM

• FPAB: 0.3
• FPNAB: 0.5
• LF1: 0.2
• LF2: 0.2
• LF3: 0.3
• LF4: 0.3
• UF1: 0.1
• UF2: 0.2
• UF3: 0.2
• UF4: 0.2

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_241041

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.84% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.3% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433850.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;