Ll_transcript_224224

Id TrinityFTRINITY_DN53152_c5_g2_i1
Name TranscriptLl_transcript_224224
SequenceCAATGATTTACCACTAATTCAAACCATTAGATTTATCTATAATTGATGTACGATTAGAAATAACTCTAAGATTAAATTAAAATGATTATTGTCGAAGAAA CCTCATAATTTGGGTAGAGAGGGGTTTTGCCCTAATAAAGGAGAAGAGGAGTGTGAGAAGTTAGTGAAAGATCGATCAATGATACAGGATTCGAAAGATA GAGTTGAAGAAGAAGAAGAAAGTGGTTGTGATGAGAATAGGCCTTCGAAGATATCAAAAACAAGCCACAACAACACTAATTCAGAGGCTATGAATGGAAA AGTTCAAAGGTATTTGGTAGCAATTGAATACATTGGAACTCATTTCTCTGGTTCACAACAACAACCTATTCACCGTACTGTCATCGGTGTTCTTCAGGAT GCTTTTTCTAAATTTATTGGCCAACCTATCTCTATCACTTCTTCAAGTCGTACTTTGCGTTGCGGCCCAAATGCGGTCTGATGCAGTTGCATTTCGTCTC AAATGTGGTCTGATGTAGTTGCATTGCAGCCCGTTACGGTCGCATCATTGTGATTCGGTGTCATACAATAATTGTGGTGTGATGTGGTCCATAATTTGAA ACTGCAATGGTGTGAGGGTATTATCCTGTATGTGCATTTCTAACTCAGCTCGCATATGGGATAGAAAATACACGAAGCTCCGGATTGCAACAGGATAGGA CATGCTATCTCATCTTGTCTTTGTCCACCAAATGAGCCCTAATTTACATATCTGCCATATGTCTTATTTATTTGTCTTTTATATAAGCAGGATGCTGGAG TTCATGCCTTGTCAAATGTTTGTCACGTTGATATTGAACGCATTAGCAAAAGGAAGCCCGGTGAAGTGGTCTGTCTCTCTTTCTGTCACATCTCATGCAA TTAGGTTGAAATTTACTAAGAATCGATGAACCTCTTTACTATTTATTCATTACTAACTTCTTTTTTTATGAAAACAATCATAGTTACCACCTCATGAACC TGATGTCGTTAGAAGGGCTGTCAACCATTTCTTACAGGTATCTATCTTCTTCTATTAACTCCTCACTTTTCCAATATGGTGAATCTTCTATCATTCAGAA AATGCTTCATCTTGCTACATGACGTTGGACAAGAAACTGCAATTTAGTCGTCAGTCATCAATGTTGAGATCATTTTTCATATTCATCTGAAATTCTGAAC AACAAACAATGGCCTATATATACAATTTCATTTTCATATTGATATAAATTGCAAATAACCTTCTGTCATATCCATGCTTGAAAGTGTCTCAGTCATATTT GAATGTCTACAAAGTGTGTCATGTAGAGGCCAAAGCTAGCACCACAGCTAACCCCAGTGTTATTATTTTTTGTATGTTTAGTATATATTTTGCCAATGCT TTTGTTGTTGATGCAGAAATTGTCCTTTTAAGTACAACCTTCTGATAGCTTTCTATCAATGTGGATCTTAATTTAATACTTACTATGAACTACAACTTTG TAATGCATATTGCAAGAAGATAAATGAAGTATTGAATTGCACAGAATGTACTATAAAAATCTGTCTATATAAGTTTATTACCAACTACATGTTGTGGTTG AATACAAAGTTTAAGTTACAACTTTTAAAAATCTGTGAAAATTTTATTTATTGTTGATATCTGTGATCAAAAGATCCTAACAATTCTATTTTTTTCATTT TGATTTATAAGCGTGACAGTGATGTAACCATTATTGATGTTCGATGTGTTCCATCTGATTTCCATGCCCGATATAAAGCTCTAGAACGCACGTGAGTACT GAAGATCTAGAGTTTGTTTCTTAAAATTTGAGATGCATGCATTGATTATCAGTTGTCATACATGTTCTTTTGTTATATCTAGCTCAACTGGCTTTTGTAA GATATAAGGTTGTTTTTCTTGGTGGATATTTGTTGGATTATTATGGACTGTTTGAGGGGTTTCTTGATGTATGAAGTTGTGCTTGATTAATATTGTAGTG ATAGTTAAGAATAGCACAGTAAGGTTTGTATTAGAATCTCTGAAGTCGAATACTTTTCCAGGCAGTGCCATAGAGTCCTGTTTTATTTGTCTATGATAAT TTGTAATAAATGGGAAGTTAGAGTCACAGCGACAGCTTTTGAAAGCGCATGGCTTCCATTTAGTATGTAAACTGGAGTATACGGAATGCAAGTTTGGCAA GAAATGCATTGACTAGCTTAGAGGTGAAAATTGGAAATCATATAATGCCAGAAGGCCAGTAATTAGAGAAGGAGGAAATCAGGAAACATTATAGACGAAA ACCATTAAAAGACTCAAGCTGGCCTTTCTGAAGACATGGTTTATGACAATACAATAACTTTGTTTGATCCATGTAGCTGACTCCACTTAGTGGGAAAAAG CTTAGTTTTTGCATGATAATTTTGTATGAGTGATGATTATTTGGAACTTCTGTTCAGATACTTCTATCGCTTGCTATCCGGGCCAGAGCCTTTGTCAACC TTTGAGAAAGATCGAGCATGGCATGTACCAGAGGAGCTTAATATTCGGGCTATGCAAGAAGCGTGCAGAGTTCTTGTTGGACACCATGATTTTAGTTCCT TCAGGGCATCTGGCTGTCAGGCAAAATCACCAATTAGAACTTTAGATGAACTCGGCGTCTGTGAGGTAATTCCGAGTCAATATTTTCCATCTGTAAAGGA TAGAGAACAACATAATAAAGTCAGTGATGATCTTCATGGATGCTCCAGCAACTCTGAAACTGACATCCCTCTTAGCTCTCTTGCAAGCATTGATAAAGTA ACAACATTAAGCGAAGACGTAGGATTTGGCAAAAGAAGAAGTCATCGTTGCTTGGTGGTAACAGCACGTTCACGTGCATTTCTTTACCATCAGGTTAGAC TACTTGTTGGTGTTCTAAAAGCCGTTGGCACCGGGAATTTAACAATTTCAGATGTTGAAAGAATTTTGAATGCCAAAGATGTTACTGCTGCTAGTCCAAT GGCGCCGGCATGTGGTCTCTATCTGGGAGAGGTGAAATATGATCTATCTAGTTAGTACACATTTTTGAGTTTCCTAGAAACATGCCATGGACTCAAGTAA ACCTCCATGAAGATGTCAAACCTATATACCTGAATTTCTCAATGTTAGATGTGTCATTTATGTTGGGTATATTTATGAGGGATTATTTTTTTACCCTTGT AACTTTTAATTTAATTTTCGTTGCTTGGGATTCCAGCATTACTTGCATATTGTATTTTATTTTTAAATTAAAAACAATGTAGTGAAAGATTACTTGGCCA AAAA BLAST
Tissueflowers
Gene nameLI_gene_31177; 
Additional informationdetails; 

Expression of Ll_transcript_224224

Labels

FPAB abscising flower pedicels
FPNAB    non-abscising flower pedicels
LF1 lower flowers stage 1
LF2 lower flowers stage 2
LF3 lower flowers stage 3
LF4 lower flowers stage 4
UF1 upper flowers stage 1
UF2 upper flowers stage 2
UF3 upper flowers stage 3
UF4 upper flowers stage 4

Annotations of Ll_transcript_224224

BlastptRNA pseudouridine synthase A from Magnetospirillum with 33.84% of identity
BlastxtRNA pseudouridine synthase A from Magnetospirillum with 34.04% of identity
EggnogFormation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (By similarity)(COG0101)
KeggLink to kegg annotations (amb0241)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019424639.1)
PfamtRNA pseudouridine synthase (PF01416.19)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;