Id Trinity | FTRINITY_DN54051_c3_g7_i2 |
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Name Transcript | Ll_transcript_141963 |
Sequence | TGATAACTGCCAGATAGGGCAGTAGCAGGCACCCTATCAGTTTCAGCCTCTACCCCAATATTAGTTACTTAATATAAAAATAATCTATTATTATTAATTA CTATTACCAATAAATTTGTTAATACCAATAATATTATTATTTTTTGTGTGCAAAATAGCAGATATGATTCATGTTTTGTTGAAATACTGAAAAGGGGAAG ATATGATTCATGTTTTTTTGGTTGATAACTGGAAATGAAGTTTTGCTCTCTCTTCTTCCAAAAATCATAACTTTTGCACACTCTCTTTTCAATTTGGAAT TTGAAGATTACCCTTTTTCTTCTCTCATTTTCCTCTTTCATTTTCATATTGTATTTGTTCTTTCATCCACCAACAACAACACCACCCTCTCTTTTTCTCA CTCATCTTTTCTCTTTCTCTCTTTGTTTTTATTCACTCAGGTTTTGAAAAACAACCTTGAATCCAATCAAAAAAGCATACATAACAGCATATTTGTGGTT CTTATTCTCTCACTTGTTGTTTCTTTGATTTTTTTTATTCTGATAGATCGGTTTTGTTTCATTACCGGTAAGTTTTCTGCACTTTTCTTCATCGTTGTCC TCTGATTTGATTAGAATTAGGTGGTTTTGAGTTTGATTTGATAGGATTCATAAACTATAATGTTTGGATTTTTTGTTTTTTTGAATACATGTTTTGTTTT TTAATTAAGTTTTCAACTTTTCAAATGATTTAGGGCCGTGTACAGAAATCTTACGTTTCGAACTGTTTTTTTTTGCTGGGTTTTAAATTGTTTAATCATC TGGTTTTGATGGTTTAAATCCAAATTGATGTAATCAATAGTGTAACTAATCTTTGCAAAAAAAATCATATTTTTTCGCTCTCTTTTATTTTGCTTATTGT CTCTTTTAAAAATGAATTGACTTTGTTTTCATTGTGTGAGCTATTGTCATTTTCTCTGGCTGGCAGGACAATTTTCTGTGATGTTAATCAGTTGTCAATG ATGCATTAGTTAGTTTTGCAACTACGGGATTATATAGTTGATGTTTGAGTGGTGACCATGTTTGCAATTTTCTGTGATGTTAATCAATTGGCATTGCAGC ATTTTCTTGTTTTGCGTCGTGTGGGATTCTGTAGTTGATAAAAGAGGTTTGAGTGCTGGTGAGGCTTGTGAAATTGTGATGTTTAGTCACATACCTGAAT ATTTTCGATGGAGCTTGCATAACTAACTGCATCCACTGATTGCGTAATATAACTGTTTGTCCAACTATTTCCATGACTAATTGCATAATCATTTGACAGC GTTCAGAACATTTTCATCCTATTTGACGTGGCTAATAGTTTTATTTTAGTATTTGAACTTTTTTAAGGCATGCCCATTTTCAATGCCTAATGATATCTTG TTTTGTTTAACAGGCGTCTGCTAAACTCGGTGCATGCTCTGCAGCTTTATTCAGTAATATTTAATTCTATCGGGTTAGGAAACTTATAGATTCCCTCAAT GCAAGAGCAGAGAAGTACAATTGGTTCCTTGCCTGAAACCATAGAATTTGATTATGGATCTACATCGAGTAACACTACAGTTAATCCGCCAATTTGCTTG AATAATATGCAGAATCCTGCAGAAAATCGCATACCTGATTATTTACTTTCCCCCGCCCCCAGTGAGATTAACCCATCTTATGTGAATTATGTAAACCGGG ACTGGCAGAACATAAATGGATGGAGGAGCTCAGGTGAGCCAAGTTCCAATAATACACAAAAAGAGGTTAACAACAATGAGCAGAAAAGAGAACTGGGATG CTTATCTTCAGTAAGTGCTAATGCTATAGGTGGTCCAATACTAGAGAGGCGCTTTAGAC BLAST |
Tissue | flowers |
Gene name | LI_gene_39311; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_141963
Blastp | Probable E3 ubiquitin-protein ligase RHG1A from Arabidopsis with 34.95% of identity |
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Blastx | Probable E3 ubiquitin-protein ligase RHG1A from Arabidopsis with 34.95% of identity |
Eggnog | zinc ion binding(ENOG41121N2) |
Kegg | Link to kegg annotations (AT5G42940) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019436946.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |