| Id Trinity | FTRINITY_DN54320_c0_g2_i10 |
|---|---|
| Name Transcript | Ll_transcript_196481 |
| Sequence | GAGCTGTTGAGTGCTACCAGCGCCAAATTAAAAAAATAGGTTGCAATTTGAAGGGCATTATCGTCCCGTCAAGAATTCGTCATTTCCTACATCTATTTTT CAACGGCGACACTGAGCTGAAAACTGAAGACTCTCTTTCCTAACTTTTCTTTCTCTTTCATCGTTTCCGAACCGGGCCGAACCGAACCGAACCGAACCGA GCTAGACCATGGGAGTGCCAGCGTTTTACCGGTGGCTCTCGGACCGGTACCCGCTCTCCATCACCGACGTTGTGGAAGAAGAGCCCGCCGACGGCGGCGG CAGCGTTCTGCTGCCGATTGATGTGTCTAAACCTAATCCCAACGGCATAGAGTTTGACAACTTGTACTTGGATATGAACGGTATAGTTCACCCTTGTTTT CACCCTGATGGCAAGCCTGCTCCTGCTACCTATGATGACGTATTCCAATCAATATTTGATTACATTGACCACATCTTTTCGTTAGTTCGTCCAAGGAAGC TTCTCTATCTTGCTATTGATGGTGTTGCACCAAGAGCCAAAATGAATCAGCAGCGTTCTCGGCGCTTCCGAGCAGCAAAAGATGCAGCTGATGCTGAAGC CGAAGAGGAAAGGCTGAGGAATGAATTTGAGGGTGAAGGACAACTTTTGCCCGCTAAAGAGAAGCCTGAAACATATGACTCAAATGTCATTACCCCTGGC ACTCAATTTATGGCAAAACTGTCAGTGGCACTTAAGTCTTATGTACAGACTAGATTGAATGACAATCCTGGATGGAAGAATATAAAGGTTATACTTTCTG ATTCAAATGCACCTGGTGAGGGCGAACATAAAATAATGGAATACATCCGGTTACAACGCAACCTTCCTGGTTCCGATCCTAATACTCGACATTGTTTGTA TGGGTTGGATGCTGATTTGATTATGCTGTCCTTAGCTACACATGAGGTTCATTTCTCAATACTGAGGGAGGTAATTACTTTACCCGGACAACAGGACAAG TGTTTTCTGTGTGCCCAAGTTGGCCATTTTGCAGCTGATTGTCCCGGTAAACCTGGCACTGAAGACAAGGACCAGAGTTCTGCTGATGATACCCCAATTC ACAAGAAGAAATACCAGTTTCTTAACATCTGGGTGCTGCGCGAATATTTGCAATACGAATTGGAGATTCCGAATCCTCCTTTTGTGATTGACTTTGAACG ATTAGTGGATGATTTTGTGTTTCTATGCTTCTTTGTTGGCAATGACTTTCTTCCACATATGCCAACACTAGAGATCAGGGAGGGGTCTATAAATTTATTG ATGCACATATATAGAAAGGAATTTACTACCATGGGTGGTTATCTTACTGATGCGGGTGAGGTTTTCCTAGACAGAGTGGAACATTTTATTCAGTCCGTTG CTGTTCATGAAGATCAAATATTTCAGAAACGTGTTCGGATTCAGCAGGCTGCGGAAATTAACGAACAGATGAAAGCTAGGTCAAGAGGAGAAATGCCTGT AGAGCCACGTACCTCAATTGTGGATAAGGTTAAGTTCGGGGAGCCTGGATACAAGGAAAGGTATTATGCTGAAAATTTTGGTGTATCAAATCCAGAGGAG ATTGACAAAATTAAGAAAGATATAGTAAGTTGTATACATTTTTCTGACAGTGAACCGTGCTGTAAGTTGGTCTTTAAATCTTCATCTAACCCCTTTGCCT GTGTTCCAGAGGAGGAAAGGGAGTGTGCTCATGCACTCCAACAGTATTTTGTCGTCATATGGGTTAAGAAATGTTCATCCTGTGTAAATAAAGTTCAATT TTACACCAGTGAATAATTTTTTATAGGACAAATATGTCCGCTGTTAGATCAAAATAAGCATCATATATATTCTTAGTATTGTTATATGGCTTTGTTGATT TTGAATAGGTTAATTACTTTTTGGTTCTTGTACAACAAACAAGCCTTAGTCATTGTAGTTTCACTGGATTTTTAAATACGCCCCTACGGTTCAAAAGTTT TTAATCAGGTACCTATACTTCAAATAAGTTTTGAACAAGTCCCTACCAGCACAAGTTTTAGGGACTTGATTACAAAAATTCTATAATAAGTGGGGATTCA GTTAAAAGCTTTAGACTATAGTGACTTCTTTAAAAATAGAGTGAAGGGATAGGGACCATAAGATTAATTTAACCTTGTAACTTGTAAGTATTTTGCTTTC TGGTGATAATTATCCTACTCAACGTCATTAATTTCTGGCTATTAGCCAAATAAATATTATGTTAGACGACAGCTTATTGCCTTAGTTGTCCCTGTAGGTC TTGAAGTATGTGGAAGGCCTTTGTTGGGTTTGCTGGTATTACTATCAGGGTGTCCGCTCGTGGAAATGGTTCGTGATATTTTTTGTTATTAGCTGTAGAT TTTATTTGTTCAACATTTCCTTCTTTTTTCTGGTTTCGTGATTGACTTGCTAAGGTGGTACATTTACATGCAAGATATACTGTTTTGTTTGAATTCATGC TGATAAGTGAAGTTGCCCCACTGTTGATCGCCCAGAAGATCAAACTCAACTAACTGGATGTATTGTAGGGCTACAAAGCTGTTCATCTGGATGTTTTGTT TTCATTATGCTTTATTTCTTTGCTTTAAGATTTCCTAGGGTAATGGGTGGGCATGAATTAAGATGATATTAATATTATAATTCTTCACTCGGCAGATGTC AATACAGTGAAAATTATGGGTTCGTTCTTTTTCTCATGGATGTATTAACTTAATTGAGTGTAATTTGATGGATGACTTGGTCTGCATCTGTTCTTGTTTA AGCAAAAATATCCTGCCTCTTTATATTATGTTGAACTTCAGTGCTACGCTTCATGACTTATAAGTTTCATTGAATACTACAACAATCCCAAAGATGGTTG CCAGATGGAATTTATCAATGTGATTTAACAAAAGACAATTTCGGCTGGATACCTTGATGACTAGGATATAGGCTCTGGTGTCTGAGGTGCTTTAAGATGA TTGATCTATATTGCTAGGAGTTCCCTTCATTTTAGTTGAATTATCACCCATAACTATTGTTCAATTTGCTCACTATCACTAATGATTTTTAATTGCTTCT GTAGGTACTACCCCTACCATTATGCTCCCTTTGCTTCTGATCTTAAAGATCTAAGTGATCTGGATATTACATTTTCTGAGGGAGAGCCATTCAAACCATT TGATCAGCTCATGGGTACCCTTCCTGCTTCAAGGTTTCTTACCCTATCCTGCCCTTATATCTTTCATACCATACTTCCTCGGCTGATACTATTTTATTGT AACAGTTCGAGTGCATTGCCAGCAAAATATAGGGATTTGATGACTGACCCTTCCTCACCTATTTTTCACTTCTACCCTGCTGAGTTTGAGATCGATATGA ACGGCAAACGATTTGCATGGCAGGGTATTGCCAAGTTGCCATTCATTGATGAGAATAAATTGCTTGCCGCCACAAGGAAGCTTGAAAACACATTAACGGA GGAAGAACAACGTCGGAATAGTGTGATGCTTGAATCTCTTTTTGTCAACCGTGCACATGGTTTGGCTCCGCAAATCTTATTGTATTACAAAGTTTGTAGT CAATCACCCCCACATGAAAGAGATGTTTGCCCTATTGACTCAAATGCTAGTGGTGGGATGAACGGATATCTTTGGTTATGCGATCCTTTACCTTTCGCAA TCAATGGATGGCAAGATATTGAGAGTAACCAAGTCTTAAATATTATATATCGTAATCCTCATAAACATAGACATAACCCAAAACCTCCTGTTGGTGTAGT AATGCCCAAAAAGTTAATAAAATCCATTGATATTAAACCTAGTCCTGTGCTATGGCATGAAGACAATTCTGGTCGGAGACAGCAAGGCAGAGAAAGGCCA CAAGTACCTGGAGCAATAGTTGGCTGTCAACTGGGAGAAGCAGCTCATCGTCTTATCAAGAACGCCCTTAACATTAAACTGAATAATACATCTCATGGAT TGTTGGAGCAACAACCTCCAGGCCATCATATAGGGAACAGGCTTCAATCAGCAGGACCCTCTGGACACAGAAATTATCATGGCGGACAGAATTACAGACA AAATTTTAGGATACAAGACAGGTCACAGCATCAAGAACATATCCACAATGTGAAGTCTGGGTTTTCTGATTTAACAAAGGAGGATGGAGTGAGAACTACG CCATCGAGGCCGCAAAAGTCCAGGCCAGCAACCAATCCACGACACCAATTTGAGCAGAACACAAGAAAGTATTATGGCGAGAACTCAAATGGTTATTATG GACAACATAATCAGCAGGGCGCAGTTTTCAGACCCAAATATCCGATCTCTACTAATGGTGGACAGAATTATAGACAAAATTTTAGGATACAAGAGAGGTC AGAAGAACAGATCCACAATGTGAAGACTGAGTTTTCTGCTTTAACAATGGAGGAAGGAGTGAGAACTAGGCCATCGAAGCCGCCAAATTCCAGACCAACA ACCAATCCACAACACCAATATGTGCAGAACATTGGTCCTCCAGTATCACCAAAGGTGATTACTAAAGCACCAATACCACCAAAGGTGATTACTAAAGCAC CAATACCACCAAAGGTGATTACTAAAGCACCAATACCACCAAAGGTGATTACTAAAGCA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_41605; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_196481
| Blastp | 5'-3' exoribonuclease 4 from Arabidopsis with 78.57% of identity |
|---|---|
| Blastx | 5'-3' exoribonuclease 4 from Arabidopsis with 78.57% of identity |
| Eggnog | 5'-3' exoribonuclease(COG5049) |
| Kegg | Link to kegg annotations (AT1G54490) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452219.1) |
| Pfam | XRN 5'-3' exonuclease N-terminus (PF03159.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |