| Id Trinity | FTRINITY_DN54434_c3_g4_i7 |
|---|---|
| Name Transcript | Ll_transcript_236374 |
| Sequence | AGAGAAATCAAAGAATGGTTCGTAAGAAGAAAGACAGTGATAGCGACGAAGACGATATCTTCTATTACCGTTACTGTTCTTCATCTTCTTCAAATCAAAA CCTAAACCTAAACCTAAACCCTTCTCAATCTCAATCTCAATCGCAATCTCAATCGCAATCGCAATCGCAAAACAACAACAACAAAGGTTCATCAGTGTTA GCTCCTTCAAAATCCACCGTTTACGTTTCCAACATCGATTACTCTCTCACAAATTCCGATCTCCACACCCTCTTCTCCACCTTCGGCCGCATCGCCCGCG TCACCGTCCTCAAAGACCGCCACACGCGCCAGAGCCGCGGCGTCGCGTTCATCCAGTTCGTCTCTCGCGACGACGCTTGCACCGCCGCTTCCCAGATGCA CCACAAGATCCTCAATGGACGCACCCTCACTGCTTCCATTGCTTCCGATAACGGACGCGCGCCGGAGTTTATCAAGAAGAGGGTTTACTCTGATACCGGT CGTTGTTTCGAGTGTGGGGAGCCGGGTCATTTGTCGTATGATTGTCCGAGGAATCAGTTGGGTCCTCGGGAGCGGCCTGCACCGAAGCGTGTGAGGCGAG GTGGAGGGAGAGGGTTTCGGCGAAATGAGGAGGAGGAGGAGGAAGAAGAGGAGGACGATGGTCGTGGCGGGGAGCGGTTTGAGGATGATAATTGGGCTTC GGTTGTGGATGATAAGGCGGATGAGAGATTGTTGGAGAGGAATGAGAAGGTTGTCGCGAAGAAGGGGAAGAAAGTTGGGTACTTTAGTGATGAGAGTGGA GATGAAGATGAAGAGTGAATCATGAAATTGAATAGGTTTTCGAAAAAATTGTGGAATAGTGTAATTAATGAGTTTTTATGTTTAAATGATTTTGTGAAAT TGGATGGTGATTTAGTACTTGATGTTGGATTTTTTGTTGAATGATGAATTTGAAGTAGGTGTTTGGAGGTATGGTGCAATAGTATAATTTTCGAGTTTTA CGTTTAAATGAATTTGAGCATAGTTATGTTCATGGAAATTGGATGATGATTTTGTACTTGATGTTTAATTGTTTGTTGAATGATGAACTTGAAACAGGTG TTTGAAGGCATTGCGTAATAGTGTAATTATTGAGTTTTATGTTTAAATGAATTTGAGCATAGATTTATGTTCATGGAAATTGGGTGATGATTTTGTACTT GATGTTGAATGATGAATTTGAAATAGGTGTTGAAGGTATGGTGTAATAGTGTAATTAATGAGTTTTTATGTTTACAAGATTTTGAGCATAGATGTATGTC GATAGAAATTGAATGATGATTTTGTACTTGTTGTTTTCAATCCGAAATGGGTTTTCGAAGGTTTGACATTATTGTTGAGTATTAAAATCTCTTTCTTGCT GAATGTTTCTTTGGTTTTAGCCTATAATTCATGTATGTTGATGATAGTTTGATCATAGTTTCTGTACATGATGAATGCAGAGGGGGGGTATTTGTTCGAA AAGTTCGAAATGTTGATCCATATGCTAAGGGAATCTTCTTTGTGCTATGTGAATGTAGTAGGTAGTCAGTAGCGGCATAGTGGAGGGTTTCTGCAATGTG AATAGGCATAATGGCGCAGTTCGGTGGCTTGAAACGGACAAAATCGCGTCCGTTCCCTCTTTTTGTTGTCGATGTTGTCATTCCACACCCCAGAGCTGCA AACATGAAACCTCTACCGGACATCCTTCTCTGTTTTTTTCTAGCAAGCCACTGTCGGATCCGGTTAGACACTGCATTTTATCCATTAACAGTGTTTTGTT CTCTTGTGTGATGCTGTGTGTATCTCTTTTCATTTTCGGATTGAACTGTGCTAATCTCTTTAACTCTTCCTGTGCTGCTTCACAAATGACAAAGCTCCTC TCGAATTTTATTTCGATTGAGTGCCGGCTGCTCCGCTATCCGATATTGACTAACATAGGTTGAACATTCTTCGATCCATGTAGCTGAATAGTCAATATGC AACCTTGGCTGTAAATACGTATGAGAACAATTCAACCATCAATCATTGTGGAGTCCCAAAAAGTGTAGCAAACTTGGTGTCATTCCTGTAGAATGCGATT TTCTAGGACAGTCTTTACACTCTCAAAGTGACTCAACTTAGTGAGATTAAAGTTTGGTTGTTGTTATATACTAAAAAAACTCGAAGTCGACTGGGGAAGA CACTGATAACTAATTTCCGCGACCCAACTTGGCTTTTCATGTGTCAAAAACTCCTCACTTATGTTGCATATAATAGGAAAGAGAGTAGCATCATGAGGAT CATCTCTCTATTTTCCTATAGCTTAAGTGCTTAACCCTTAAAACGAATAAAGAAACAGATTCGTCTTTGACCTCATTGATGATTTTCCTATCGACTTTTT TCGGTATTACTAAAGATATTTCTTCACCTGTTGACTTGTTATATAGTTTTATGCTGAATAATTTTTTGAATCTTTTATGAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_42640; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_236374
| Blastp | U11/U12 small nuclear ribonucleoprotein 31 kDa protein from Arabidopsis with 53.9% of identity |
|---|---|
| Blastx | U11/U12 small nuclear ribonucleoprotein 31 kDa protein from Arabidopsis with 64.33% of identity |
| Eggnog | Zinc finger CCHC-type and RNA binding motif 1(ENOG4111IY7) |
| Kegg | Link to kegg annotations (AT3G10400) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420092.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF13893.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |