| Id Trinity | FTRINITY_DN54450_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_237347 |
| Sequence | GTTAAATTAATACATACGATCAACGAGCATTGGTTCAAATAATACATGTTTGATTCTCTTAAGCAAGTTATCGGGTTGGATAATGGAAGAAATGTGCCCT TAGAAGAAAAATAGGCAAGTAAAACAAGAAACGTGTAAAAAAGAGTTAAAAACGAGAGAACGTAAATTGGCATCTCCTTGTAGATCTGCTATTTCTTCGC TTCTTCCTCATCCATCCTTCAAATTCCAATATCAATCCTCCTTCTCCTTCTCATAACTCCATTCTCTCCTCTCAGGTCAGCTCTTTTTCTTTCCTTCTCT CTTTTTCCCTCTTTTTCATTTTCCATATTCTTAGGGTTTTTCGATTATGCTAGATCTTGATTTCCATCTCATATAATATCATCAAAACAATACCTGATTC ATTTTATTTATTTTATTTTTTAGCAAAAATTAGAACCCTACGCGTTGGAAAATGAGGGTTTCGAACTCAATAAATGTCGGTTCAGTTATAAAAGTTAATA GGCGTGTTTGTATGTGGATTATTGGTTCTGATACGCAATGACATGTTGTTATATACACCAGATATATGAATGAAATGCTTATTTGCTTGTTTTGAAGGTT GTGATTTGAATGGAAGGAACTGGAGGCAGCAGTGCCTCAGCTGCTGCACCCGTGAACCAATGGTTGCTGGAATTTTCGAGGCGATTTCAGCATTATCTTG ATAAATCAACCCCACACTCTACGTATAGATGGATCGGGACTGTTGGTATTGCGTCAATCTATGTTTTGAGGGTTTTTTATTTACAGGGATTTTACATCGT GTCTTATGGTCTGGGAATCTATTTGCTGAACCTGTTGATTGGGTTTCTGTCACCTTTGGTTGATCCCGAGCTGGAGCCTTCTGATGGGCCTACGCTGCCA ACTAAAGGTTCTGACGAGTTCAAACCATTCATTCGCCGGCTTCCTGAGTTCAAATTTTGGTAATTTAGGAATTTAGTTTTATGCCTAATGCATTATCATA ATTGCTTCAAAGTCTTCCTTTGTCATTTTAAGTTCCTTTTATTTTTTCTAGAAAACTTTGATTAAATTTGTAATTCATGTTTATATTTGGTGCTCCAATG CTTGTTGTCTAGGCACTCACCTTTTTCGTGATTTGACTTGTAGTAACTTGTCTATGGTAATCTGTCATACCATGTATGACTCTGATTTCTGAATTCCAGC TGGTAGTATAAGTTTGCACACCTAAGATCTAATAGCCATCTAGTAAGTTTCCCAAATTTTCCATTTACTTTTCAAGAAAGCATTTGATTGATCATTGGAA AATAACTCCTACCTTCAGAAAGATGGAAATATTAACTTGCTATTTCTTGCTCCCAGCTGCCATAGCCTGTCACTTCAGCTAATTGTTATCGGCTTCTGGC TTCCGGAGCCTGTTGGTCATTGCACATAGCAAAAGATGTTAAGATGTTTACTTGGAAATGCTTCTTTTTATTTTTTTATTTCAAAGTTCCTTAAAATATA AGCCTCACTGATGGCTATATTTTCCTGAAACATAAACATCCAGATCAAATTATTTGGCCTTAATTGTCTGCACATAAGAAGCACAGAGGCTTTACAGTGG TTGCTGGGTTGTATCCATGTCAAACACATCTGTATCTGACACTCCCGCCTATACTTTTACGATGTTTTATATCTACTTTTTGGATATTATACCATTATAG ATCGGAATGTCACAATGATTAGCTAAAGATTAGCATTTTATTTTGTTTACAATGGCTCTTGCTAAGTTTTCTAACTTTAGTTTTTTTACTTTAGATTCAT GCTTTCATGTTAATCTTATATCAATTTTATATCTTGTACCATAGTCGCGATAACATTTGAAATACGTCATAGCCCCATGTTCCTGATGTGTTGGGTCCAT GTAACATGTTGTTCCTTGCTTTCATTTCCCTGGCAAATTTCATGTTTTCACAAAACCATGGTTTTAAGAATGCAAGTCACTAAAAGTTATGGCCAGCCTC TATTTCACTGTTAATTTCATTGCTATTGTTGGTGCAGGTATTCTTTCACGAAGGCCTTATGCATAGCATTTGTGATGACTTTCTTTTCCGTATTTGATGT TCCTGTCTTCTGGCCCATATTACTCTGTTACTGGGTTGTTCTATTTGTGCTTACAATGAGGCGCCAAATTGCACACATGGTCAAATACAGATATATTCCA TTCAACCTTGGAAAGCAGAAGTATGGTGGCAAGAGATCTTCTGCTGGTAGCAGTGGCACTCGTGCAGACTGAAACTAAGCTGTTCCATGATTTGAAGAAT GCAGATTTCAAAGATAGGTTTTGTGAGCATTCAGGGTAGTATGTAGTCAAAAGTATTATGAAAATCTTATTGTGTCCACTAGTTATATGATACTGGAAGA CATGCTAATGTTGGCAGTGAACTTTATGTTCATATACATCAGTATTTGTTTCAGTTTTAGATTTTCTTGCAAATGAATTCTTGTATTGTGATGCTTCTCT TGCCTGGTATTTTTTTCGATAATCCAAAGGCAAACTTTTAGCAGCCTTTTCATTTTTTCAGAAAATCTTACTGTTAAGGATATGATTTTGAGTGTTAAAA TTTCCCCCACTTGTGATTTGTCAAAAATGTAATGTGCATTTAAGAATTAGCCGAATTTTATGCACATGCAGCTTATTCTGATGCTGCCAATTCCAACATT AAAGTACCTTCTGTTGAAGTGTTTGTGATTAGAGTTGAAATTGGAACACGTGCTTTATATTTTGGTCGAACACTTTTTACTTGCATTTCAACCTGATTCT AATAGAATTACTAGGTTGCTGACTTGCTGGACCTGAGTTTGTTCAATATATGTTGAGTTTAAGGGATGTGAACTTAAGGTGTATAGTTTTTTACACTATT TTGAGCGGCCATTGATGTGTATTATTTTTAAATTGACATAATGCATAATTGTAAATGTTATAGCGGTTCAACTTTTTGGTCCAGAAGATTGATTGTTGAT GCATAATAAGGCTTAAGCATAGATCAATGAGGAATCAATGGTGAGTGTAGATCAATAAGGAAACAGTGTTGATATTCTATTTTTATCATTGGATTCGTTT GCTTTTCAGAAGATTGTTGCTTAAACTTGTCGCATATACTATTACAAATCAAACGTGGGCAATTCGATGAAATGTTCTCCTTGCTTATGAAAACAAATAT ATTATATGAAACCAAAAATGTTTCCAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_42795; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_237347
| Blastp | Protein RER1B from Arabidopsis with 73.5% of identity |
|---|---|
| Blastx | Protein RER1B from Arabidopsis with 80.77% of identity |
| Eggnog | RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)(COG5249) |
| Kegg | Link to kegg annotations (AT2G21600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413892.1) |
| Pfam | Rer1 family (PF03248.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |