| Id Trinity | FTRINITY_DN55509_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_75995 |
| Sequence | CCTATCCATTTGTTATGATGATGCTTACGTGCTTCACTTAGCCGATTCATAATTCATTCTTCTCCGCCTTCCTACTCAAGAAAATAATATTGAAGTTTTA TTAAACGAAAAAATATAAAACCCTTCTAAAACCCTCCTTAAACCACTTTCCTAGTACTTACCCCCATAAGCATGTGGACCCCAACGCCGGAGACGCTAGC TTCCACTAAAACCGCCCTTTCCGTTGCCGCTTCACTCGCCGCCACCGCGGTTCTCCTCCGATCTACCGTTAACGATCTCATACCTGATACCGTCTACAAC TACTTCAACTCCAACTTTCGCAAATTCTCTAACCGACTCTCCTCTCACCTCACCATCATCATCGAAGAACACGACGGTCTCACCGCCAACCAAATGTTTG ACACCGCCAATGTTTATGTGGGATCCAAACAACAATCTTCAGCGCAAAGAATCAAGGTGCATAAGCCACTCAAAGAAGAGCATTTACAAGTTAACATTGA CAAGAACCAAGAGTTTTATGATTCCTACAAAGGCATAAAACTCAAATGGGTCCTCGTTTCTATGCAAAACAACAACATAAATCTTCATAACAAGCGTGAT AGTCACAACAATGCTTCATTTCATCGAGTTGAAGTGCGTCACTTTGAGTTAACCTTTCACAAGAAGCATAGAGACACGGTTTTGGGTTCTTACTTGCACC ACGTTCTTCACGAGGCTGAGGCAATTAGAGAGGGCAAGAAAACTTTGAAACTTCACACCATTGATTACAATGGCACTGATTATTGGAACTCGATTGTATT AAACCACCCTGCCACATTTGATACTGTGGCCATGGAACCTGAGATGAAAGTGCAACTGTTGGAAGATCTGTGTAAGTTTCTGGATAGGAAAGAGTATTAT AAGAGAGTTGGGAAGTCTTGGAAACGAGGTTACCTTTTGTATGGCCCCCCAGGTACTGGAAAATCAAGCTTGATTGCTGCAATGGCTAACCATCTCAAGT TTGACATATATGACATGGATTTGAGGGAGGTGCAGTGTAATTCGGATCTTAGAAGGTTGCTTATTGGGACGGGAAGCCGATCAATTTTGGTGATTGAGGA CATCGATTGCTCAGTAAAATTGCACAACCGGGAAGTAAATAATAATGGTGAAGATGAAGATAAGTCAATATTCTATCAGCTTAGTGCACTCAAAATGGAT GCACATAGTTTATATACAAGATTGTGGTACCATTGATGCAATGTAACACTTTGATGTTGAGTTCACTCGAATTTGTTTGATCCTATCAAGGTTACTCTGT CAGGATTGCTAAACTTCATTGATGGATTGTGGTCAAGCTGTGGAGATGAACGAATCATAATATTTACAACAAATTACAAGGATCGTCTTGATCCGGCATT GTTGAGACCTGGTCGCATGGATATGCACATTCATATGTCTTATTGCTCTTTCAGTGGTTTCAAGACATTGGCGGCTAACTACCTACGAATTCAGAACCAT CCCCTGTTTGAGGACATAGAGGGACTGTTGCACAAGGTTAATGCAACGCCTGCTGAAGTTGCAGGAGAGCTGATGAAAAGTGACAATACAGACAGTGCCA TCAAAGGGCTCATCAGCTTCCTTCAATGCAAGCAGCCAGGCATAACAACACCTTAAAGTAAGGTGTTTTCCTTATTTTTGAGCCAGAGGCAGCACCTTTT CAGTGTTATAGTTAGTATATTGTTTTAAGAATATTTCTTAGGAACAAGAATAGTTTATGTTGGAGATGTGATTGGATTTTAATAAGGGTTCTCTTAACTT TAACTTTAGCCTAAGAACCGAGGACAAGGTATTAAAAGTGATAAAAAGATTATTGACTTATTAAGAGAGAAATGAAAACTTTCCCCAATAGAATTCATTC ATATGAACAGGGCATTAATGAGATGTTTATTAGAAATTTATAATTTCTAATTA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_52060; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_75995
| Blastp | Protein HYPER-SENSITIVITY-RELATED 4 from Arabidopsis with 48.93% of identity |
|---|---|
| Blastx | AAA-ATPase At3g50940 from Arabidopsis with 47.36% of identity |
| Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
| Kegg | Link to kegg annotations (AT3G50930) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457304.1) |
| Pfam | Domain associated at C-terminal with AAA (PF14363.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |