Ll_transcript_71642

Id TrinityFTRINITY_DN56011_c0_g1_i8
Name TranscriptLl_transcript_71642
SequenceATAAAACTAACTTGAGCAAACAACAGAAGATAGGGACAAAGAGATAAGGATTTAAAGCCTTGCCATTCATTTCCCTCCCTCTATCTTCATGACCCATTTC CTTTTTTCCCATAAACACTTCATTTTTACAATTTTACCGAACTTCTAAGACCAAACTGTTCCTCTCATTTTTTTTGGTCTTTTGAACCTTCTGAGGTACC TATTATGCTTCAAACAATGATGAACCTTTTTGTTTTTCTATTCTACTTATTCCATTATTCTGTTAAAATTGCTTATTTGAACTTTGAACTCACTTTTTAC TGTTGCAAAACCTCTTCAAAAAATTCTTATTCCACACTTGTAGCTCAATTTACTAAGCTTATGTTATTAATTTTGGAAAAAGGATCTTGGGTTTTCATGT TCTCCTCAATTATGTGTATCAGTGTGGTGTTTCCATGAAATGACCTTTAAAAACTTCTTTTTGTTCATTCTGTAAGGTTAATTTGCATTATAGACTATTT TATAATCTGTGGGGTGGTTTAAAAATTTATTTAGTGGTTCATAGTATCATGTTATGTTATATTTTGTTGGATTACTATCAACTGGCATTGGTTCAAGTGG TGCATGCTTGATTCCCCTTAAGCAAGGGTCTTGGGTTCGATTCTTGTGGATGGAAGAAACTCTTGTTGGGAGAGTTAGCCCCACATACCTGTGTGGATGT TCGACTCAGATAGGATTGCCTTTAGATACCCGTGGGAAACCAAAAAAAAATTTGTTGGATTGCCAAAACCAAATATTGAAATTCAACAATTCAAAGATAT TTAGATTTTGGGCAAGGTGAAAGAATTGAGGATTGTGCTCCAAACCCTTCTTCTTGAAATGTGCTACAATTTTCTAGTGAATTGTATAAGCATGTCGCAA GAAAAATAATGAGTATCTTGTATATAGGGAGTTTTAGCTAATTATATATAACTTGTAAACTATAGAAACTTCGTGAAACGTTTAGAACAAATAGCATCGC CATTAGAATGACGCGAGTAAATAGACATTACGAAGCTATTGTGTAAAGTGTGGTCGTGAAGGTTGTTTTACTATATATGCATATCTATGTCATTCAGCTA CTACAATTACTCCTACAATTATTGTTCTATCAAATATATGTTGTTTTCATGTATGATCAATTGACTCTCATGTCTTACTATCATTTCGATCCTTTCTAAA TTAAACAACACTTCTAAACACCATACATGAATGAAATGATGAGATGAAAAATAACCAATTGTTTTGTAGGAGGGAATAAACCATTTTAAAGGATGATTAT ATCACCATAAACAGTTTTAATCAAGTTAATTACCATGATCTTACTGAATAGAAGTCCTAACTTGCGGTTTGTTAAAATCGTGAAATGCTCAATTCTTTTA CTTTCTTTGTCTTAGTAAAATTTATACAGGGTAGTTTTTCATGGAGTCAGGAGAATTGCAATGTAGTGAGGATGAGTATTTAGTTATGATTAGCAAAATA TGTGGCTATGCTAGATGTGCTTGTGCAGATATCGATGCTGAAATATGTAGCATGTTACTTAATTTGATTCATTTATTTTGTAAAATTTTGCTTTTTAAAC CAATTATTTGATTTATAACCAAAATTGATTTTTAACTGTATGTTATGTGAAAATGACAACAGATGAGCCGTTCTGATATATAACCGAGTTTCACAATTCA AGCTAACATGAACCCTGTAATTCCATGTTCTGTCAGCAATGTTTCACTTATTCCTGGTGTCGCCTTTCCAACAAGGACGAATAATTCTTTAACAACACTC AGTTTGTCAAAGAGCTCTGTAAAGTCTGTATCATCAACTCGGAGATGTCTCTTACCTTCGTTTGTTGCCAATGGAGTGTTTCCAAAGAACAAAAGGAGAT TCTCTTTTCATAAAAAATCTCGGACCAGCATATCAGCCACCACAGAAACTGAAGTAGCAGTAGAGGAACCAGGTTCCACTGTTGCAGGCGAAGTTTCTGG CGAAACTCCTTCAGATGATGTTGGAACAAGTGAGGATTCATCTCCGAAGTCTGATGCCAAATCTGATCCAGCTAAAGCCAACCGTTCAAGACCTGCAAGT GCAAGGAGAAGTGACTTGCCTCCTGTAAAGAATGAGGATTTGATTCCTGGGGCAACTTTTACCGGCAAAGTTAAATCTATCCAACCATTTGGTGCCTTCA TTGATTTTGGAGCTTTCACAGATGGGCTTGTTCACGTTTCAATGTTGAGTGATGACTATGTTAAGGATGTTTCAAAGGTTGTTTCTGTCGGACAAGAAGT GAAGGTGAAGCTGATTGAAGTGAACACTGAAACTCGGCGTATTTCTCTCTCTATGCGTGAAAATGCAGACACTGGTAAGCAACGTAAAGAGACATCTACC AATGCAGAGAAAGGTGGACCTGGGAAGAGGAACACTTCAAAACCAGGTCCAAGGAAAGATGGTGGGAGGAAAAGCTCAAAATTTGTCATAGGGCAGGACC TGCAGGGTACAGTGAAGAATATGACTAGGAGTGGTGCTTTTATTTCTCTTCCTGATGGGGAGGAAGGATTTCTACCAATATCCGAGGAACCTGATGATGG ATTTGGGAATGTTATGGGAAACACATCGCTGGAGGTTGGTCAAGAAGTCAGTGTGCGTGTTTTGCGTATCTCGAGAGGACAAGCAACATTGACTATGAAG AAAGCGGAAGATGCTGTGAAAGTGGACACAGTACTTGGTGAAGGCGTTGTCCATGTTGCAACAAACCCTTTTTTGTTGGCCTTTCGTAAGAATAAGGATA TTGCTAAGTTTTTGGATGAGAGGGAGAAAATTCAGAATACAGTTGAAAATTCTTCTACCACAAAAACTTCAGAAGATGTTAAGGAAACTGTCAAGGAAGC GGAAGCTGTTGTGAAGGATGAACCAGAAAGCATCGAGACCTTGATAGATGATGCTCCTTCTGCAGATGATATTTCTGAGGAAGATGCGGGAGCCAGTGCA TTTGATGGTTCCTCAATAGCTATTGTGGATGATGAAAGAGATTCAGTTCCCAATCTCTCTAGCCAAGCACCATCTATAGACGATGCTGCTGAGAAGGACA CAAAGGAGGTGGCTTCTGGAAGCTTGGCTCCTGAAGGGGATCTATCTACTCTAAATCCAATTATTGAGGAAGCCACTCAGGCAGATGTCACAACAAGCAC CATAGAAACTGAGTCACCTCTTGAAACAGCTAATGGAAATATAATCGAAAGTGGAGTTGATCCTATCATTGTGGAAGATGAACAATCACAAACATCTAAT ACAAAGGAAGGTTTTGCTGCAGCAGCATTAACAGACAGTGATGTTGTTGAACCTAGCCCTGATAATGTTGACACTATTGCACCACCTCCCCAAGAAACTG CAGGTTGTGTGTACTCTATCTAACATTCTGCTAAACAAAGCCATCTGTCCTTTTGTCTGTCTCATTTATATTTACATATTGAAATACTGATTAGAAGTCT ATTCTCAAAATGACAACTAAAAAGAAACATATTTGTTCAATAAGATGCCATTCAAAGAGCCTCCCATTTAACTTATCAAATAATATGCCATTTACATCAC AAGTAGATGACAATGTTGAAATTTTTCCCAAGAAGAATGACAGTGATACCTAAGTTTAAGTGGACAAAATGGTGAGTTGTCTTCTGAGGGAAGCTTGAAT AAAGGTTATGCTTAAAAAACTCAATTCCTGTTTGCCTGGTTCAATTTTGGGCAGTGAATGAAAATTGGTAGCAAGTTTTGTAAAATTGGGCTGTATTTGA TCTTTATATTTGAATCATATATTACATGATACTGCATCCCTTTCATTTCCAATGTAATCACTATCAATTAGTTTTATGTAACTGAAGCAATTGATCTCAT TATAATTGGCTTATTTATTTAACACATGGAGGATTTTTATCTATACTTTTGTTATAAAGAGAATTTTCTTGAACTTTTAATCCTCTTTCAACAGATGAGG CAGAAGAAAATGATCAAGTTCCCCCTCCTGAAACTCCTGCCACTGAAGTCATAGAAGGATCCATTGAGGAGCCCAAAGAAGAGCAAAATCAATCACCAAA CACAGAGAATGAAAATTTGCTTACCTCACAAGTTGAACATAAAGAGGTTACAATTGCATCCGAGGAAAATAATGCCTCATCTAATTCTAATGGGCAAACT AGCACTACTCCTTCAGATGAAGGCTCACTTCAAGCAACTATATCCCCGGCACTTGTGAAGCATCTTCGGGAAGAAACGGGAGCTGGAATGATGGACTGCA AAAAAGCTCTGGTGGATACTGGTGGAGACATTATTAAAGCACAAGAGTTCCTTAGGAAAAAAGGGTTATCAAGTGCAGAAAAGAAAGCTAGCAGAGTAAC AGCTGAAGGAAGAATAGGGTCTTACATCCATGACAGCAGGATTGGTGTTTTGATAGAAGTTAACTGTGAGACAGATTTTGTATCCCGTGGTGACATTTTT AAAGAGCTGGTTGATGATATAGCCATGCAAGTGGCTGCATGCCCTCAAGTAGAGTATCTTTCTACTGAAGATGTTCCTGATGAATTTGTGAACAAAGAAA AAGAGATAGAAATGCAGAAAGAAGATCTTTCATCTAAACCAGAGCAATTTAGATCGAAGATTGTTGAAGGGAGGATAAGAAAAAGGCTTGAGGAGCTGGC ATTGCTTGAGCAACCTTACATTAAGAATGATAAAGTGGCGGTAAAGGACTTTGTTAAGCAGAC BLAST
Tissueflowers
Gene nameLI_gene_56569; 
Additional informationdetails; 

Expression of Ll_transcript_71642

Labels

FPAB abscising flower pedicels
FPNAB    non-abscising flower pedicels
LF1 lower flowers stage 1
LF2 lower flowers stage 2
LF3 lower flowers stage 3
LF4 lower flowers stage 4
UF1 upper flowers stage 1
UF2 upper flowers stage 2
UF3 upper flowers stage 3
UF4 upper flowers stage 4

Annotations of Ll_transcript_71642

Blastp30S ribosomal protein S1 homolog from Bacillus with 34.36% of identity
BlastxElongation factor Ts from Prochlorococcus with 64.41% of identity
Eggnogthus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539)
KeggLink to kegg annotations (BSU22880)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019457841.1)
PfamS1 RNA binding domain (PF00575.22)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;