| Id Trinity | FTRINITY_DN59222_c1_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_15672 |
| Sequence | AAATAAACCGCAACACCCATTTGTAACATAACAGTTGATATGCCACTTTCCTTCTCCACCTTGTTCTGCATTCATTTGTATCGGCACTTTGCGAGAGATA TCTCAATTATTCACCCACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGACGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAA AAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTGCTTAATC AGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCCAGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTT GATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAAT GCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAA GTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGC TCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTT CGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGGAATAATAACACACAATCCGGGGACCGTCTCTTCTATG ATTATCTTGAGAGTTGCCTTCGGCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAATTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAAC TCCAGCTATTACTGTTCTTCAGCTTTTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACACCCA ATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATTGCTACACTTGCTATTACTACTCTCTTGAAGACAGGAA ATGAATCAAGTGTGGACCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATT ATGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGAAGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGAT TCAATTGTTATTCTTATTAGAGACATTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGTGAATTCATTGAAGATTGTGAATTCACTTATTTGTCCA CGCAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTCGTTATATCTATAACAGAGTGCATCTTGAGAATGCAAC TGTCAGGGCCAGTGCTGTGAGCACACTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCCTCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGAC AATGACGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCT TTGGGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCTGAAGAGGCTTTTGACATTAACTCGGTGCCCAAGGTGGT CAAGTCTCAGCCTCTTGCAGAGAAGAAAGCCACAGGTAAAAAACCAACGGGTTTGGGTGCTCCTCTCAGTGCTCCCCCATCTACTGCAGATGCATATGAA AGGCTGCTGTTGTCCATTCCTGAGTTTGCAAATTTTGGGAAGCATTTTAAGTCCTCACCGCCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTA ATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATACCGGAACAGTTATTGGAAGATGTTATTGTAATTGTGGA TGCATCAGAAGCAGAGGAGTTTTCTGAGGTTTTTGCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACTTTTGTGGCATTCGAGAAACCC GAGGGACTGCCAACAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAG ATGAATACCAGCTTGAAGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCTTGGACCCTGA TTCTGAACGAGTGGATGAATATGGTCTCGGCCCAAGAGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAATCTTCTTGGATTGCAGCCTTGTGAGGTA AGCCAATGTATCGATTGCTGCATCGGTTAATGTTTCTTGTTATGTGGCCCTTTTTATTATACTGGTTATGAGCTGTTTGCACTATTTTTACTGCAATTTA ATGCTCTGCTTGTTAGGTTCTGCCAAAAGACCATTATAATGTTGCTGTCTATCAAGATTAGATGACAGATTTGTTTTTATGTATAATTTATTATCAGGAG TTAGTGTTCTCTTAATATAATAGTACTTTAAGGTGCATATCCTTTGAAGTTGAACTGTGACATTGGCAAACTCAAACCACAAAGATGTCCTTGTGTGTGT TTAAGATGTTGTTTGGGCAGAATACTTTTGGTTGGATATGTGTAGCCACACACATGCATAGTCAGACTTCAAAGACATTTTTAGGTGCATGGGGGTTATT TGGTTAAGAGACTTCTCCCCCTTGCACAAAGATCATGCCCAGGTGATTAGAGTTTGATTTAACTAACATGTAGATGCGGATGCAAATACATTTGACACAT TTAAAATATCATAGTTCATTTGAAAGCTATGGATGTTGAACTTTGTGACATTGACAAACTCCAACCATGAGGTGGTTATGGATGCGCACATAAATACTGT TGTATGCACAGAGAATATAAATTAGATGAGATTTTTAGGTGCTGATGGGAAGGCATTTGTCTTGCTGCATGAAGCACTTGAGAATCAGTTATTCATTGGT ATCTCATATTCACTGGTATATTGGAGGAAGGCAATAACTTTCTAATAATTTTTATTTGTTCACTATGTGCAGGGCACAGAAGTTGTTCCACCCAATTCAA GGTCACACTCGTGCTTATTGTCAGGTGTATTCATAGGGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83979; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15672
| Blastp | Coatomer subunit gamma from Arabidopsis with 85.77% of identity |
|---|---|
| Blastx | Coatomer subunit gamma-2 from Oryza sativa with 86.8% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240) |
| Kegg | Link to kegg annotations (AT4G34450) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448506.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |