Ll_transcript_297934

• Id Trinity: TRINITY_DN40931_c0_g1_i1
• Name Transcript: Ll_transcript_297934
• Sequence: AATGGAAGCATGATTTGTATAATTTATTCTAACTAAAAATAAAAAAATTATAATCCATCTTTATCTATATGTTGTGCAAGAATCAGGTTCCTCTTTTTCC TTGTCACTCTCTGTGATTAGATTATTGTCAAGTCAATGGTCTTAGTTTCAGAATTGCTTTAAGGCACAATAAGCTTCTCTGGAACGTTAACTCTTGTTCT TCTGAATAGGTTGATTTTCTTTGATGGGCACTGTGGAGACTCGATCACCGAAAGCACCATCTGGGTGTTCTTCTCCTTTGCCAGAAAGTGACAACAATGA GCTAAAGGAAGCTCTTTGTGCTTTGAAAGATGGGGCCCCAGAAAGTGGTGTTGGTGATATTGATGGTGGTGTTGTTGAAGTGGTAAAGAGCAGGGTCTTC GAGACCAAGGTTTCGGTTCGGAGTGATTTTGCAGGGAGAGAAGTGGAAGATGGTTGTGAAGGTTTAGCTGATTCTGAGATGAATGGGGTCTCTTCTTTGC TGAAAATGAGAGGAAGTGGTGGTAGAAGCGGGACATTTTCGTATGGCATCGAGAATGGTTCTTTTGGGGCTGGAATGGAAGGAGAACGAAAAGATTTGAA GAAAGGTGAGGATGAAGATAACAAATATGGCAAAATTGTGACTATAGATGTTCCGGTTGTAGAGACAAGTGACAACAAGGATTTGGAGATGGATGATTTT GGCGGTGGTGGTGGTAATGAGTTTTCTGTGGGTGATTTTGTTTGGGGGAAGATTAAAAATCATCCCTGGTGGCCTGGCCGGATTTATGACCATTCTGATG CGTCAGATTTTGCGTTGAAATTGAAACAAAAGAATAGACTCCTTGTTGCTTACTTTGGGGATGAAACCTTCGCTTGGTGTCATCCTTCTCAATTGAAACC GTTCGAGGAGAATTTTGAGGACCTGGTTATCCAGAGTAGCTCCAGGGTGTTTGTCAATGCTGTAGAAGAAGCCGTAAATGAGGTTGGAAGACTATTGGAT TTGAAGTTGAATTATTCATATTCTGCAAAGCAAACTAAGTCTGAATTTGCACTACCAGTGGCAAAGAATTCTGGAATCAAGGAAGGACATCTTGTACCTG AAAATGGTATAGAGAAACTTTTGAATGTATTTGTTGATCCAGTGGAACTGCTTTCTCGAGTGAAGCAAATTGCAGAAGTTGTTGCTGTTAATAGTATTCT TGAGCTGGAAGTATTAAAGTCTCGCCTTTCAGCTGTATGTCTATCAAGAGGAGGTTATAAACTACCTAATTATGAAGAGCCCGAACCGATTCCCGGACTT GAAGATGGTTCAACAGATGAAACAGCAGATGCAGTGGAAGCACCTGTCCATGGGCCATTTGAAGAGGAGTATAACTTGCCTGTGAGCCCTAAATCCGGTG AACGAAGTCATTCTCAAGGGATTTCAGGAAGCATATCGAATCATAGGAGGAAGCAGAAAAGCATTGCTGAAATTATGGGAGAGAACAAAGATGTTAGTAC CAAAAATAAGGAGGGGGATGCAACTGAAACCGTGATGGTTAAAAGGAAGAGGAAAGACAGTGAAGATGCAATGCCATCTAAGCCGGTGCAGAAGAGAAAA GGTTTCACGAGTACTGAAAATGATGGCAATGGTGGCGAGGAAAACAGTGACCAAATCATGTTGTCTCAATTGAAAGAAAAGAAAGAAGCTTTTAGCAACG AAAATGCTAGCAGTGGGAGCAAAACTGATGAAAGGAACGCCAAAGAACAATATGAGAAGGGTTATTTGTCAAGGGAAAGGAAGAAAAGCAAATACTTATC CCCTCCCTTCACCACTCCTCCAACCCGAGGGCAGAGAAAGGGAGACATAGAAACAGAACCACTTAAAGTTTCAAGCAAACATCGACCATATGAACCAATA ACCAGAGCTTCTGACCAGGAGAATTTCTCGAGCAAACTTGTGATAGAACTGGACCTTCCTGATAGCTCAAATTACCAAGCACCAGATGGTGAAGAGAACA GGATTATTAATCCCTTGAAAATCCTGGCATCTTCAGGGGAAGTTCTATCCGAAGTCCGCTATGCAGCTATTAATCCGCAAATTCCAAGGGATGCCAATTC TCTTGAGGAATTGGTGGACTTCATTTCTGTCTATAGAAGCTCTTTATATAGCCATGGACCCTCCTATAAAGTATACAATAAGCGTCAACCTGGTAGGAAG AGAAAGAAGCCAGAATCTGACGCTGAGATGTTGAGGAAAGATCGAAATCAAACTGATCATATATCACCTAATAATGATTCGGAGCCGAGGAAGAGAAGAA GAAAGGAGACAACATCAGGCAAGCCTGAAGAGCAATCTGGTAAATCTAAGCCTGCTAAGAAGACGACTAATGAAAAATCTCCAGCTGCTGTGGCCCTACT TGTCTCATTTGGGCCAGGATCGTCTGTGCCTTCAAAACATGATCTCGTCACAGTTTATAGTAAGTTTGGAGCTCTGAATGAATCAGAAACAGGGTTCTCT GATAATTACACTGCTCATGTGTCTTTTCTTAAAGCTTCTGATGCTGAAAACGCCTTGAACCATTCACAAAACATGAGCCCCTTTGGGTCTTCGGAAGTTA GTTTTGGACTGCAATATCTTTCTGCCAAATCCGAGTCTGGAGAGCATGTTAAAAAGTCGAAGTCAAAAGCTGCTTTATCAGCCAAATCACCAGCTGCACT GTTAACAGGTAATGAAGCATCCAAATTGAAGTACATAAAGCTGAAACTTCTGGGAATGACCTCAATACTAGAAGCATTGGATGGTAAATCGCCAGATATG AAGACAAAATTAGAAAGTGAGATGAAACAGCTTTTGGAGGACGTGAACAAAATGGTCGAATCTTCTTCGTCGTAGATGACACACAGAACATTCAGGGTAG GTTTATTATGTCATTTCCTTGTTGTGGTCCTTCTTTATTTGTTTGTCCCATTTCTGTGCTTAGATTGATTTAAGAGGTAATTACTTATAACGTACCAGTT TGTTATGCAGAATATGTAACTAGTTTGCATGCATAGTCTGTGTACTACAAAGACCAATATCTTTAGATTTTTGTCTCTTATTATGGTGGTGAAAATAACT TTCATGGATCAGAAGTATAATTTGATTTTATAATCTCGTGTGACACTAAATTCGGCTATTATAGGAGTAATGATGATTAATAGAAAAAAGAGATGGTGGC ATCTTTTGTGGAAATGATGTTTCTTTTGTTCCCATATTTGGAAATAAATCATGAACTTCCCTTTAGGTCTTAT
• Tissue: pods
• Gene name: LI_gene_132725;
• Additional information: details;

Expression of Ll_transcript_297934

FPKM

• PAB: 4.1
• PNAB: 10.7
• PS1: 15.8
• PS2: 8.2
• PS3: 12
• PW1: 15.6
• PW2: 13.7
• PW3: 15.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_297934

• Blastp: Serine/threonine-protein kinase ATM from Arabidopsis with 27.96% of identity
• Blastx: Serine/threonine-protein kinase ATM from Arabidopsis with 27.96% of identity
• Eggnog: ataxia telangiectasia mutated(ENOG410XNPY)
• Kegg: Link to kegg annotations (AT3G48190)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019455590.1)
• Pfam: PWWP domain (PF00855.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;