Id Trinity | TRINITY_DN42091_c0_g1_i3 |
---|---|
Name Transcript | Ll_transcript_428567 |
Sequence | GAAAAGCCCATTAAAACATAAACCCTAATTCATAGGGAATAGTGATTAGTCAGAAGTGACAATGTTTTCTGTTGGAACCAACAAGAAGAAGAGCAATGCG AGAGTCCTCGACAACCACGATTCTCCGATCACTCCTCACCGTATCTCCGTCGATGAAACCGCCCTCCACAATAGACCTTCCACCGGCACCCCCGCTCCAT GGGCTCCTAGCTTATCCATTCTTGCCCGGGTTAATCAGGTCAACAGAACTCGAAAAGATGACACAACCGATTCAGTTAATCCTGTTTTTGTTGCTGAGTT TCCCCAACTAGTTCGCGACGAGCAAGCCTCTTTGCTCCGTAAGCGTGTTTCTGCTGAAGATTACACATCTGGTGGGATTGACAAGAGTACATCACTGGCT TGGATTATTTGTGGAAACAAGGTCTTCCTTTGGAGTTATTTGTCGCCTGCTTCTCTGATGAAATGTGTTGTTCTTGAAATTCCTTTTGATACTTCGGATG ATGGAGATGTTGACAGGAATGATGCTGGTAGCTGGTTGCTTTGTGTTGTTAATTGTGACAGCGCATCCATGGGAACCAATAAAGTTGCAAGACATTGCAA CTCAGCTGCTGTTGTTATGTGCAATAGAAAAACTAGGGCTCTTATATACTGGCCTGACATTTATTCTCAATCACACAATGCTCCAGTCACTAGTCTTGCA TCTTCTGATGAGTTGGAGGCTCTTTTGACACCTGATAGGAAGACTTCCTTCAACAGGCATCGGGGACAGAGTAAGCTACGCAGTGGTGTGAATGCATTGC CTCTGTTTAATTCTTTGATTGCTTCTCCGGTCCCGGATTGCAATTTTGTATGTGTTGCCCTTGCATGTAGCTCGAATGGTGAACTTTGGAAGTTTCACTG CTTTCCTTCTGGCATTCATCGGACGAAAGTATATGAAAATATTGTGCATTTCCCTCACCAAGGGGTCGGTGATTCAGGTCAATTTGTGAGCAATAAGGGG TATCCAAAGTCATTGACATGGTGTTCTCCACATTATTCTACTAAAGAATCAAATCGACAATTTTTGGTATTGACTGACCGAGGGATACAGTGTTTTAGGG TAGAGTTTAATTCTGATGTTCATGTTTCAAAGCTTTGGTCCCAGGAGATTGTTGGAACAGATGCTGAGGTTGGCATTAAAAAGGATCTTGCTGGTCAAAA GGAAATCTGGCTTCTTGATGTGATGGTAGATGATCGTTGTAAAGTGTTTACCGTTCTTTTTGCAATCTTTTGTAAGGACCGGATTAGCAGTTCAAGCTAC TTGCAGTATTCTCTGCTAACCATGCAATATAAATCAGGGTTGGGTGGAGAGAATACAAATGACAGGGTTTTGGAGAAAAAAGCTCCTATCGAAGTGATAA TCCCAAAAGCTAGAGTTGAAGATAAAGATTTTTTGTTTTCCATGAGGCTTCGTGTAGGGGGAAAACCTTCAGGTTCTACACTTGTAATATCTGGGGATGG AACTGCAACTGTCTCCCATTATTATAGAAACTGTACTCGACTCTACCAATTTGATTTACCCTATGATGCTGGAAAAGTACTAGATGCTTCAGTCCTTCCT TCCGCAGATGATTATGAAGAAGGTGCATGGGTTGTGTTAACAGAGAAAGCAGGAATATGGGCAATACCTGAGACGGCTGTCATACTTGGTGGAGTTGAAC CTCCTGAGCGGAGCTTATCACGCAAAGGCAGCTCAAATGAAAGATCCACACAAGAAGAGATACGAAATCTTACATTTGCTGGTAATTTTGCTCCTAGAAG GGCTAGTTCTGAAGCATGGGGTGCTGGAGATAGACAAAGGGCAGGTTTGAGTGGTATCACACGTCGAACTGCACAAGATGAAGAATCAGAAGCTTTATTG AATCATATTTTCAACGAATTTTTATCATCTGGGCAACTTGACTGGTCACTGGAGAAGCTAGAAACTTCTGGTTCATTTGAAAGGGATGGAGAAACAAATG TTTTTGTGAGAATGAGCAAATCGATCATTGACACTTTAGCTAAACACTGGACAACAACGAGAGGCGCTGAGATTTTGGCCATGGCTGCTGTTTCCACCCA ACTCTTAGAAAAGCAGCAGAAGCATCAAAAGTTCCTTCACTTTCTTGCTTTGTCCAAATGCCATGAGGAGCTGTGTTCTAGGCAGAGACATGCCTTGCAA ATTATCTTGGAACATGGTGAAAAGTTATCTGCAATGACTCAGCTTAGGGAACTGCAAAATCTGATTAGCCAGAGTCGTTCTACTAGTGTTGGCTACTCCA ATTCGAGTTTGGGTATTCAGATGTCAGGTGCCCTTTGGGACATGATACAGTTAGTTGGTGAGAGAGCTCGCCGCAATACTGTCCTTCTGATGGATAGGGA TAACGCTGAAGTGTTCTACAGTAAGGTTTCTGATCTTGAGGATTTCTTTTACTGCTTAGATGCAGAGTTAGAATATATTATAAGCCCAGAGCACCCTTTT GGGATCCAGATCCAGAGGGCGTGTGAACTCTCAAATGCATGTGTTGCCATAATTAGGACATGCTTCAACTATAAGAATGAGAATCATTTATGGTATCCAC CTCCTGAGGGTTTAACCTCTTGGTATTGTCAACATGTTGTACGTAAGGGGATTTGGAGTGTTGCTTCTATTCTGCTTCAGTTGTTAAATGGAAATTCTGG GCTTGATAAATCAGCAAAATTGGATTTGTATAATCATTTAGAAGCACTAGGTGATGTCCTACTTGAGGCATATTCTGGTGCTATTACAGCTAAAATTGAG TGTGGAGAAGAACACACTGGTCTACTAAATGAATACTGGGTGAGGCGTGATGAGCTTCTTGAATCCCTTTATCAACAAGTCAAAGAATTTGAAGATACCC AAAAGGACTCGATTGAAGGAGCTGAAGAACAGAGTGAAGAAGCAATTATGAAAGTTACGTCACATCTGCTATCAATCGCTAAACGACATGGATGTTACAA AGTTATGTGGACAATATGCTGTGATCTAAATGACTCAGAATTACTCAGGAACATTATGCGTGAAAGCTTGGGACCCAATGGGGGTTTTAGCAACTATGTC TTTAAGAAACTAATTGAAAGTAGACAATTTTCCGAGCTTTTAAGGCTAGGGGAAGAATTTCCAGAAGAACTATCCATTTTCCTCACGGAACAACCAGATC TTCTTTGGCTTCATGATTTGTTCCTTCATCAATTTTCGTCTGCTTCAGATACACTTCATGCATTGGCTCTCACTCAAAACTTGCAGTCTACCTCAGTTGC TGAAGGAGAAGAGGACTATATTAAGTCGAAGCTAAAATTGGTGGACAGAAAGAAGCTTTTGTATCTCTCCAAGATAGCTGCCTTCGCCGCTGGTAAGGAT GCTGGTATTCAGGTGAAGGTGGATCGAATTGAGGCTGATTTGAAGATTCTAAAATTACAGGAAGAGGTAATGAAGTGTCTCCATTCCATTGAAGATAAGG AACATGTTGAACATCAGCTGCTTCATCCAGAAGACTTGATCAAACTGTGCCTGGAAGGTGAAGAGCGGAAACTCTCATTGTGGGCCTTTGACGTGTTTGC ATGGACCAGTTCCTCGTTCCGTAAGGTCCACTTAAAGCTTTTAGAGGACTGCTGGAAGAACGCTGCCTCTCATGATGATTGGAGCACATTACAAAATTCT TACACAGTTGGAGGATGGAGTGATGACGAAACCCAGCAAAACTTGAAAAATACTGTACTTTTCCAGGCTTCAAGCAGGTGTTATGGATTGCGAGCTGAAA CCTTTGAAGAAGGGTTTGATCAAGTATTGCCCTTGAGGCAAGAAAACTTGGAGGATAGTCCTATTCTGAATGATATGAGTTCTTCAGTTGAAACAATATT GATGCAGCACAAGGATTTTGCAGATGCAGGCAAACTAATGTTATTGGCAGTGATGTTAGGTAGTGAGCGTGGTATGAAACTCGAAGGAGGGCCTTCCCCT ATGGAATGATAGTGTGCTAAAAAATCATTCCTATCCATAATACACTAGCATGACATGTGATGCAGATATATAGTGCTCATTATTCGTTATTCTCTGATGT GTTGCATTCCTTCACCCAGGATAATATCGTTTGGGTCCTTTATAGAAATTGTAGCTTTTACTAGTATTGACGAGACTTGTTTAACACGTCTATCATGAGA TAAAAATACCACACATATATATATATATATATATATATATACATGGGTGACACGTTCCATGTCATTTGTGTAACAAAGACAAGCAAGAAGGCTTCCACTC TAAAGTCACAGTTTTTATGACCACAAATTGACACATTAGATTCAAGAGAACATTTGGTATGTAGTTCAATTCCACTAATCATTAGTCTCTAAGTTGTTAA GCTACCAAGGCAGTAACTTTTATGACCATGAAAAGAATAGTGTCAAATTCGGTGATCACTTTGTAGCA BLAST |
Tissue | pods |
Gene name | LI_gene_134144; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_428567
Blastp | Nuclear pore complex protein NUP133 from Arabidopsis with 54.47% of identity |
---|---|
Blastx | Nuclear pore complex protein NUP133 from Arabidopsis with 54.47% of identity |
Eggnog | Non-repetitive/WGA-negative nucleoporin C-terminal(ENOG410ZVJJ) |
Kegg | Link to kegg annotations (AT2G05120) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019460731.1) |
Pfam | Nup133 N terminal like (PF08801.10) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |