Ll_transcript_494920

• Id Trinity: TRINITY_DN43651_c0_g1_i2
• Name Transcript: Ll_transcript_494920
• Sequence: CATTATCAAAACCCCATTAGAACTTTAGAAACCAAACCTATAGCAGCTTCTTCAATTCATCAATGGAACATTGTTTAGCTTCAACATGTATTATGCCATT GAGTTTCAATTTCAACAATTCTAAAAGAACAATCCTTTTTCCAACAACAACCTTAACCAAATCAAAACCTTTGTTGTCTCTTGTCAATGCTTCCAACACC AAAAGAAACACCTTGTCTTCTAATTGGCTTGTCTCAAATGATGATTTCTCTTCTCTATCAACTGCTTCTCCTTGGCTTCCTACACTTCAACAACTTGATA CCACTAACATGCTCCTTCGTCAAAGGATTATCTTTTTGGGTTCTCAGGTAGACGATGTAACTGCGGATTATATCATCAGTCAGCTTTTGTTTTTGGATGC TGAAGACCCCAAGAAAGATATCACATTGTTTATTAACTCACCTGGTGGTTCTGTTACTGCTGGAATGGGAATTTATGATGCCATGAAGTTATGCAAAGCA GATGTGTCAACTGTTTGCCTTGGTCTTGCTGCATCGATGGGTGCATTCATCCTAGCTTCTGGTACCAAAGGGAAGAGGTATTGTATGCCGAATTCAAGAG TTATGATTCATCAGCCACTCGGAACTGCTGGTGGAAAAGTAAGATTGTCCACATATATCCTCTTCGATCATTGTACCTTTAAACTAATTCTGAAGTTTGC ATTGGTTATTTTTGTTTGCATTCATACTACGAAGTTAAAATATATGCTTACTTTCGATTTCAAGCTTATTTTGGAGTAGTGCGGGATTTGGGCGGTGTAA GATTCCCTTTATATGCATGCTAGTGCTCAGATTATCACTAGACCTTTGTTAACTTAATTCCAAATCGAAATGAGTGAAAGACCCTATCCTTTCAAATATG ATAAACCCCGACATGATTACTTTTAATATAACTAATAAATTGATTAGGCGACATTGGTTGATACAATCATATTTATCTTAGTAACCCAAGTAGTTTTTTG CATATATCAAGACTATCCACTAAATGAAACCATGTTGACATTCTGAACTAACAACTACTTTATGTTCTTCTTTTATTTTTTTTGGTTATGCATCAATTGT GCTAGTTGTCAGATAATTGCAATCACATACCATTAGTTTCATGGAGTGATGGATTCTACATGTTTAATTCATTTTCTGAATATATCTTCGGTAATTGTAA GTCTCTCACCATCTAAAATGAGTATGTGAAGGAATGATTTGAGGGTTACGAATATATTTGGCCTTACATTATGCTTTTCAAGCTAATCAAAATTTTGTTG CCGTATCTTACAATTTGTTATAATTAATGATACATGATTCATGAAATACGTTTTTTGATTCACAATAAGTATACAACCTCAACCAATACTAAGCTAATTT ACATGATGTGGCGGTTCATTTGTTATTCACTTTGTGAACATTGCTTTTTTTCCGCAAATGTTCCATCTAGACATGAAACTGTGTTTTTGTCCAATTCCAC ATCCTTTTAAGTATAAACCACCTATACCCTTTTGTTTACTAAACAACAAATTTAATATGCTTTTGGAAGTGAAGTATTTTTTTAATATATTATTGGTACA TTCGATGTGCAACCATTTGAAAAAGGGAGGGGTAAAGGTAGGTCATGTTCTAGTTGTGCTTTAAGGTGATCGGCTAGAAGCTAAGTTTAGATTTGGTTGA AAATTTTGTATTGGTTGCAATCGGCAGTACAGGATTCTATAATACAAGGTTATCGACAAATAGAGATGTAATCATATAATTCGAGCTGGGAAGATGAAAT GGAAGAACGCCGGTTAATTGCGGTAGAAATGTACCTATCAAGCTAAAAGGAAAATCCTACCGCACAACCATAAGACCAACAATGCCTTATGGTACTGAAT CTGCGGCAGTAAAGTGGTAATAAGAGCATGATGCTGAGTGTGGCAAAGATAACATTGTTGCATTGGATTAGTGAGCATACAAGAAAATATGGGATTAGGA ATGCATCTATTAAGGAAAGTATGAATGACACCTATTGAAGAAAGATGGTAGAATCTAGCGTAAGAAGACCAATAGAAACGCTATTTAGGATAATTGATTA GGTGGAGGTTAGTCCTATAGTTAGACGGAGAGTAATACCAAGAAAAACGATAGAAGTGAAGAGCACAATGGTGTCATTTGAATCATGTAGCCGATCCACC TAATAGGAGATCAATTTTATTTTTATTTATTTATTTAAATGTAGGTTATATATATGGCGTCGAGCTTCGGTAGGTATGTGATGTTAAGTTCTAGAGATAC CTGCAAAAACTTGACATATCTTACAAAAAAATTGGTTTCATTTTGTTTGTAAAAGGTGAATGATTAAGCTTTATCATTGTATATTGTTAATTTGTATAAC ACAACAATTACAGGCTACGGAAATGAGCATTCGTATTCGAGAAATGGCGTATCACAAGATTAAGATAAACAAGATACTATCAAGAGTTACAGGGAAGCCT GAAGAACAGGTTGAAGTGGACACGGATCGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATACGGTTTAATCGACGGTGTTATTGATGATGGAAAAC CAGGATTAGTTGCACCAATTGCAGATGCATCACCACCCCCAAGAACTCGGGTATGGGATCAGTGGAAAGTCGAAGGAAGCCGCAAAGCGAGGAAAAACTT TCCCTCCGAGCACAAGTTTTTACATAATGCAGATAAAGGAGGTGAAGGAAGTGGTGATGATAATGGCACTGGACAAGAAGAAGAAGCACCTGCTGCTGTA TGAGTCTGCACAAGGAATGTGTTGCTTTTCTACACATTAAGCACTTTTTTTTATTTTAACTTATTCATAATCACTTTTAACCTGAAGATAAAAGGGATTT TCACTTTGTTATAGCAGGTTATATTCCATGTAAGATTCAGACTGTATAATATTTAGCAAAAGAAATTTATATGCTTGAAGCATTACATGCCTTAATGAAA TATATTGTTTTCTTCTTAAAA
• Tissue: pods
• Gene name: LI_gene_136387;
• Additional information: details;

Expression of Ll_transcript_494920

FPKM

• PAB: 0.3
• PNAB: 0.4
• PS1: 0
• PS2: 0
• PS3: 0.5
• PW1: 0.6
• PW2: 0.3
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_494920

• Blastp: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic from Arabidopsis with 66.84% of identity
• Blastx: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic from Arabidopsis with 76.67% of identity
• Eggnog: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity)(COG0740)
• Kegg: Link to kegg annotations (AT1G66670)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453049.1)
• Pfam: Clp protease (PF00574.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;