Ll_transcript_277984

• Id Trinity: TRINITY_DN43788_c0_g2_i1
• Name Transcript: Ll_transcript_277984
• Sequence: AAACTCTATACTCTATAGATTTTCTTACTGATAATTCTAAAGACACACCTCGAAACTCCAATCTGTCATGTCTTTTTAATTTTTATGTTGCAAAAAAGTT TCTGAATTGAATTCATGTCCATGACTTTGGTGAACTAACTTACAGTGCATGATTAATTCCACTGGACCGTGAAAATGGCTACACCATCTCTGCGACTCCC ACTCTTCACATTACTCACCAAAACCCCATACCCACGTTTCCGAAGCAGGTGGCGTTGGTTCCGTCATTTCTCTTCTTCCACTGAACCCCAACTTCAACAT TCTTGGCAACCCGTTCGTAAGAAAAAGGTGGTTATGCGCGTCGGATATGTTGGCACCAATTACCGAGGTCTCCAAATGCAGCTGAATGAACATTCACTCT CAACTGTTGAGAAAGAACTAGAAATTGCCATATTCAAAGCTGGTGGCATTCGTGATAGTAATTTTGGGGATCTGCAGAAGATCGGATGGGCCAGAAGTAG CCGAACGGACAAAGGGGTTCATTCTCTGGCAACAATGATATCCTTTAAAATGGAAATCCCAGAAAATTCTTGGAGTGAGGACCCTAATGGTATTGCCCTG GCAGATTGTATTAACTCTTATCTTCCTTCTGATATCAAAGTTTTAAGCGTTTTGCCTTCACAAAGGTAAGCCTTGTAACCCAGTTCACTGTTGAGTATTC TTAATATAGAAGACACTCTGAAATGTTACGTTTGTTCTATGTTGTGAAATTTTTAATTTTTAATGAAGTGGGCTATACATTTCTTTTTAATTTCACTAGT TTTGGATTTTCTTATTGATAGATTTCTTAGTCTCTGCTGCTATTTTGTTTTGCTCTTTAATTTTGTTTTTCGGATCTTGGACCCAGGAGCTTTGATCCCC GGAGGGAGTGCATTATGCGCAAGTATTTGTATGTCCTCCCTGCTGAAATTATTGGTATCCAAAGCCACTCTAGCAATGATGAAATTGATTACCACATATC TGAGTTTAATAACATTCTTAAAGAATTTGAGGGGGGACATCCTTTCCATAATTATACGGCTAGGTCCAAGTACAGGAAACACTCACTTCGTAGGCACTCA TCATCAAAGAGTGGCACATCTATAAGTACGAGCATGTCAGCCTCTGAGTCAGACTGTGAGGATAATGATGGCGGAGAAAATTTTATATTTGACGAGGCAT TCACAGAAAATATAATGTGCCATAGTAAAAAAAATTCAGAAACTGATGATTATGGTGAACCTGTTGTTGAAACTAGCAATAAAAATGGAAACGGTTTGTC TGGTCAAGATTCCAAATTGGTTGTTCGTGCAAAATGGTTACATGAACCTGATGAAGCAGATAGATTAAATGCTTCCCATTTTAGAAAAGTTTTCCAGTGT TCTTGTGGAAAGCTGGAAAGATCACTTGGATATAATTATGTTGAGCTCTCCATACATGGAGAGTCCTTCATGTTACATCAGATACGAAAAATGGTTGGGA CAGCTGTGGCGGTAAAACGCAAGTTGCTTCCCAAAGACATCCTAATGCTGTCACTGTTAAAGTTCTCTCGAATTATTCTGCCCATTGCGCCACCAGAAGT TTTAATATTAAGGGCAAACAGCTTCATATTACGAACGCGGCCAGGAAAAGTAACAAGGCTTGAAATGCTGACCATAGTTGAGTCAGATGAAATAAATAAG GTAGCTGATGATTTTTACACATCAGTTATGTTACCTCAAGTTTCAAAATTTTTGAACCCATCAAAATCACCTTGGGAAGAATGGATTAAAAAATTGGATG CTCACACAAGTATACCAAATGATCAGTTGGATGAGGTCAGGAAAGCTTGGAAATTGTGGAAAGGAAATCTTGAAAGTTCAACTAGTATTCATCCATCATA ACTGAAGGAAATTAAAAGGAAAAACAGATAAATGTCCATAAGGCTTCTGTACTACGTTTGATATTCAGGCTACTTGGCCGGTGATCTATCAGTGGACAAC CATGCTGGCTGAATACCTTTGTTATGGAATAATTAGACCTAAGAGTAAGAGATGTGTTTTAATTGGCTTGAATGTCCAGTGGAAACCAGTTCTCAAGAAA TCATCAAGCCGACCTGTGACAACATCATAGACTGGCAAATTTTCACTAGTCAAGGTAAGTATCAAACTTCATCCCCGAGCAGGTACAATAATATTTCTAC ATTTAGTTAGAGATAGGAGACTTATGACTTGCTACGGGTTATTATTTTCACTCTGAAAAGGCATATACTTCATTTCATGCTGATGTTTTTATCTTCTGCT TAAAGTATTACATACATGGTGTTCATGATTTTTGGGATTTTTAATGAATAAACAAATTTCAATTTCCTTTTCTAGAGATCCTGGTGTTTATGATTTTGAT ACCAATACCTTTTTATTTTAGCAAGCCAACACGCGTGGGGTGTTGCTGCTGCCCCATTGAAAGTTTTGTGGAACTGTCGTGGCCTAATGGCTATTTGAGT ATAGTATAAGACCCATGCTATTTTCTCTAATGGCTCTTGATAGCTACCAAGTGGTCCAATTATACATAATACAGTCTTGTACATGAGAAATGATATGGTC CATATATTTCTGAGTTCCATGAACTCTTCTATACTATTTCACAATGCTGCACTCGATTGTATGTTTTTGCCATTTCTAGCCAGAGTTTCTCCAGCATTGG TTATCTGTTCTGCTTTTATGCAAAGTTCACCTCTTCTTTTATTGTTCTGTTTGATAGATCATGACATT
• Tissue: pods
• Gene name: LI_gene_136596;
• Additional information: details;

Expression of Ll_transcript_277984

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.1
• PS2: 0.6
• PS3: 0.1
• PW1: 0
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_277984

• Blastp: Putative tRNA pseudouridine synthase from Arabidopsis with 48.43% of identity
• Blastx: Putative tRNA pseudouridine synthase from Arabidopsis with 57.53% of identity
• Eggnog: Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (By similarity)(COG0101)
• Kegg: Link to kegg annotations (AT2G30320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456938.1)
• Pfam: tRNA pseudouridine synthase (PF01416.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;