| Id Trinity | TRINITY_DN44085_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_504076 |
| Sequence | AAAAAAATGGTCTAACTTATTATTACACGTGACATAACATTCGGAATTGAAAACCCAAAAACAAAGAAACAGATCAGAGAGATAATTGGTTTTGGTTCGA AGGGATCACAGAGTAACCGAATTGAATCAAAATGTTCCATCAATTTGGAGCGACGGCGGAGTCTCTGAGCAAGGCGTCGACGGCGGTGTTTCGGATCGGC ACCGACGCGCACCTCTACGACGATCCTGAAGACGTGAACATAGCTCCTCTCCTCGACAGCAAATTCGATTCCGAGAAATGTGAAGCTCTCAAACGCTTAC TCGCTCTCATCGCTCAAGGCTTCGATGTTTCCAATTTCTTCCCTCAGGTTGTTAAAAATGTTGCGTCTCAATCATTGGAAGTTAAGAAGCTGGCTTACTT GTACCTCCTGCATTATGCTGAAAAGCATCCAAATGAAGTGTTGCTATCCATTAATTGTTTCCAAAAGGACCTGGGAGACACAAATCCATTGGTGAGGGCA TGGGCGCTTCGTGCCATGGCGGGAATCCGCCTTCATGTAATTGCGCCTCTTGTCATAGTTGCTGTTGGAAAATGTGCTAGAGATCCTTCTGTCTATGTTA GAAAATGTGCTGCTAATGCTCTTCCTAAACTTCATGATTTGCGGATGGAGGAACATACTTCTGCAATTGAAGAGGTTCAGCTCATAAACTTTGATTCTTC ATATGGTGCAGATTGTTGGACTATTGTTAAATGACCATTCCCCAGGAGTTGTTGGAGCTGCTGCTTCTGCATTTACCTCTGTTTGCCCGAACAATTTTTC ATTGATTGGAAGAAATTACAGAAGGTTGTGTGAGATTCTTCCTGATGTGGAAGAGTGGGGTCAAATAATTCTAATCGGAATCCTTCTGCGGTATGTGATA GCGAGGCATGGGCTTGTCAAAGAATCGATCATGTGTTCTTTTTATAATAAAGATGATGGCAATGTGGTGAAAGATGAACCAGACATTGTTTTTAAAAAAA ATTCTAGTTATGCCAATGAGGAGGCTGTATCTGAATTAGCAAATATGATATTTCAGTGTTACATTGAAGGGCCAGATGAGTACTTATCACGGTCAAGTTC TACAAATAGGGTTGCTCCTAAATTAGATGTATCACAATTTACATCTTGCAGTAATGATGTTGTGAAGATCCTGCTGCAGTGCACATCACCATTGTTATGG TGTAATAACAGTGCAGTTGTACTTGCAGCTGCTGGAGTACATTGGATAATGGCTTCTAAGGGGAATGTTGAAACAATTGTTAAACCACTCTTGTTTATAA TGCGATCATCATATGCCTCAAGATATGTGGTATTATGCAATATCCAAGTGTTTGCTAAAGCTATGCCATCTCTCTTCACTCCACACTATCAAGACTTCTT CATATGTTCTTCAGATTCCTATCAGATAAAAGCGCTGAAACTGGAGATACTTTCTTCTATTGCTACAGATTCATCTTTTCCATACATTCTGAAAGAGTTT CAGGATTATATTAGAGATTCCGACCGGAGATTTGTTGCTGATACAGTTGCTGCCTTAGGACTATGTGCCCAGCGACTTCCCAAAATGGCAACTACATGCT TGGAAGGATTGTTGGCTCTGATTAGACAGGAACTTTCGTGTGGTGAAATCAGATCTGTGGATGGAGAAGAGACAGTGCTAATTCAGGCAATTATGTCCAT CAAGTCAATTGTACAATTAGAACCCCCCAGTCATGAGAAGGTTATAATTCAGTTGATCCGTAGTTTGGATATAATCAAGGTTCCTGCTGCCCGTGCAATG ATTATTTGGATGTTGGGGGAGTATTGCTCTTTGGGTGAGTTAATTCCAAGGATGTTGAGTACGGTGCTAAAGTATCTTGCTTGGTGTTTTCCTTCAGAAG CAATAGAAACCAAGCTTCAGATTCTTAATACAACTGCAAAGGTCTTACTATGCATTAAGGGAGAAGATATTTGGACCCTGAGAAAAGTCTGGAGTTATGT AATTGAACTGGCTGAGTGCGATCTGAACTACGATGTCCGTGATCGTTCGCGTTTCTTAAAGAAACTTCTCTCAAGCAATTTGGAGCCTCAAAATTTGGAA GAAGAAAACAGTGAATCACAAAGAAGAGACCAGTCCTATGTACTTGCAGAATGCATATTTGGTAGACAAATAAAAGCTGTGACAGTGTCATCTGAACCCA TCAATTACCGGTTTTATCTCCCCGGGTCTCTTTCGCAGTTAGTATTCCATGCAGCTCCAGGATATGAACCTCTCCCAAAACCTTGTAGTCTTCCATATAT TGATCTTGATCAGCGTGATGGAGCTTCTGAGGGTGATTCAGATGAGGAGGATGGTTCTGGCACATCTGGATCATTGGATGAGGAAAGTGCTTCTGATTAT AGCTCTGAACAGTCAATTACTGGTTCAAGTGAAGACAGTGGCAGTAACGAGAATGTTTCTGGCAATGAAGGTGGCAACCATGCAGATCCATTGATTCAGA TTTCAGACATTGGCAATGTCTATGATAACCAGAATGGTGGGGCTCATTCTAGCACAGCCGATTTTGGGGACTTGATGTCAACTAAGTCTCTTGAGTCTTG GTTGGATGAGGCACCCACATCATCAAACGAAACTGGAACAGAGCAAAACCGAGTTCATAGATCTTCAGCGAGAATAACAATCAGAAATATCGAAAGCCGA GTTAAACCCAAATGCTACACACTTTTAGATCCTACAAATGGAAATGGGTTAAAGGTGAATTATTCATTTTCATCTGAGGCTTCGAGCATTGCCTCCCATC TTATATGTCTAGAACTATACTTCGAAAATTTTTCATCGGAGCCCATGTTTGATATAATCTTAATAGATGAGAATTCTAGTAAAAGCTCAGATTCTATGGA CCAAATATCTCCGACATCTGAAAATACCTTGAAAATCCATACTGATAAACCAGCATTGGTTTCCATGGAGGAGATCCCTTCTCTGGAGCCTGGCCAGACA GCAAACCGGACTGTACTCGTTCGCTTCCATCACCACCTTTTGCCTCTGAAACTGGCTATATTTTGCAATGACAAAACATTCCCTGTTAAGTTACGACCTG ACATTGGATACTTTGTAAAACCACTTTCGATCAGTATTGAAGCTTTCAGAGATAAGGAATCTCACCTTTGCGGGATGTTTGAATATGTGAGGAGTTGCGC CTTCACTGATCACATTCAAGAGCTGAACAAGGGAACTAACTCTTTGACAGAGGACAAATTTCTTGTGATCTGTGAAAGCTTAGCACTTAAGATGCTGAGC AATGCAAATCTTTCTCTTGTATCTGTGGATATGCCGGTCGCTTCCAACCTTGATGATGCTTCTGGTTTGTGCTTGCGTTTCAGCAGTGAGATCTTGAGCA ACTCCATACCATGTTTAATTACAGTTACTGTTGAAGGTAAATGCTCCGACCCATTGACTGTTTCTGCAAAAGTCAACTGTGAAGAGACTGTATTTGGCTT AAATTTCTTAAATAGGGTTGTCAATTTCTTGGTGGAACCATCTGTTACCCACTCATAAGTTTTGATATTGTATAGAAGATTCATAAATATTATTCATTTA TGAGATGATATATTGGAAAAACTTGAAGTGCAATCGTTTTGGTTTTGGATGTATTTTAGGCTATGGTGAGTTATTGGAGTTATGGTTTTCCATTTTTTAA TCTGTTGGGAAGGATGAAAATGGAGGGAGGTTTTGTAATTCAACCTTGTATGACTGTAATCTCTAATTTTCCATAGATTTTCATGTCTTCTTTTCAATTC TCATTGAGTGTGGTTATGGTTTCTGGTGAAATGGAGCTTTCTAATTTAGTTTCTGATTCAGTTGTAAGCAAAACACAACTATTGTATGAGGAATTTATAC TGAACCTTTTCTGAGAAGCATATTTTGTATTTTACTGAATTTTGATGTGAGATAAAAGAGTTGCTATGTTCATAAGCCTTCACTTTTATGGAGTTGCTAT GGTCCCCTCTACCTAAATGTTTGATGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_137072; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_504076
| Blastp | AP3-complex subunit beta-A from Arabidopsis with 56.49% of identity |
|---|---|
| Blastx | AP3-complex subunit beta-A from Arabidopsis with 55.28% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT3G55480) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432911.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |