| Id Trinity | TRINITY_DN44189_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_340199 |
| Sequence | CTAATGTTTGAACACTTTGAACTGAAGAAGCAGTCAACTCATGTGACAATGTTGCAAATTATTACCAAAACAGACAAAAAGGTTGTAGAAAAGTATCTGA AGCTTTGGATTCTTGTTTACCATGAGAAAATCATGGGGGAACTTTCATTATGATGTAAATTGAACAGGAGTTTCAGACTTGTCTTTTGTCTTGTGGGCTC ACCCTGCACCTTTTATGTTATTCAAAAGCTACTTTCTCTATTATTAGTATCTTTTTATCTCTCTTATGCTTCTATCTAGCTATGATGCTGATAAGGAATT TTGTACCCTTCAACTATAGGTTAGCAAATTATCTTCTTTTCCTTTTACAGCACTTCCTATTGAATTCACTTTATATGGGTATATTTTCAAAGCTTTAGAT TTTTTTATTTTTAAAATTTTTTTGGTTACTTCTTAGTTCTATTGATCAGCAATTTGAGTATCTAAATGGTGAATTTTGGTAAATTCCTTAGGTGTGAGGT TCTCAGATCTGAAAAAGATTATGATTTTATACCTGGAATTGTGTTATGTACTTCAAAGTAAACCAGTGCACAAAAAAGTAGTGTTAAAAAGTTGCTATAG TTGGACACTTGGACTTAGAAATGCACATGTTTTTATAAGGCCATTTTCATATGTTAAATATGTATGTCACTTACAAGAGTATGCATAGCTTATGTGAAGC ATCTAAAGAGGTAATTTGAAGTGCTTATTCTTATGTTCTTTGTTTTCTGTTAATGACATTTCAGGAAAGTATCAAGTGATATGTTACAGAATGAGAGCTA AAAGTTGGATAAGTAAGAAGTTTAGCATTAGAGGGAAACTAAGAAAGATGAGTAAGTGTTTATGTTCTACCATGGAACAGTTTAAGGTTATTGATGATAT AAGTTCTTCATCAGAGTCGTTGGCAACCAAAGACTACTCCGCAAGTGGCGGTTATTCCTCCCATCCTGGTGAAACAGAAACAAAGGTGGAAAATAGAAAC ATTGAAGAAGCAGAATCGTCTCTTCGCGAAAGTGGTTATTTAAACTACGAGGAAGCTAGAGCACTATTAGGAAGACTGGAGTATCAGAAAGGTAATATTG AAGCTGCACTTCATGTCTTTGAAGGAATAGATATTGATGCTGTTATTCCCAAGATCAAAATTTCCATATCTAGAAGACATGCATCAAATAGATCCCTTTC CCAAAGTGATGCAATGCCTCCTATGTCAATTCCTGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCAAAATCATTGCAGACTCTTGGAAGGTTT CAAGGTGATTCTTTTATCTAGTTTCTTATGCTCATTTAATCTTTTTCATGCACATATCATCTTAGTTACCTTTCGCCTTACTGTGGAAACCGGTGATTTC TGTTAGATCCTTAAACATTCCGAACAAATCAAAGTCGTTTAATTTGCAGTCTATGAGTTATTTGTTAATGAACTTATGAATTTTTAGGTTCTGCTCAATC ATGCAAAACTATTCTAGACACTTTTGAATCGGCATTACCAGAAGGTTTGCCTGAAAACTTTGTTTCAGACAGTAAATTACACGAGACTGTAATAAATGCG GTAGAACTGCTTCCAGAGTTGTGGAAACTTGCAGGTTCTCCTCAAGATGTCATCTCATCATATAGGCGTTCGTTGATTTATCACTGGAATCTTGACACTG AAACCATTTCAAGAATACAAAAGGACTTTGCTTTGTTTCTTTTGTACGGTGGTTGCGAAGCTAGCCCTCCTTCTCTACGCTCTCAGTTGGATGGTTCGTA TGTTCCAATAAACAATATAGAAGAAGCTGTTCTTCTGCTTCTGATTGTGCTAAGAAAATCTGCTCTTGGAAGCATTGTTTTGGACCCTTCAATAATTGAT CACCTTTCTTTTGCTCTAAGTGTTTCGGGTGAATTCATGACCCTGGCTAAACATATTGAGGAATTGCTTCCAGAAACAATGGAGAGAAAAGAAAGATATT ATACTCTAGCTCTTTGTTACTGTGGAGAAGGTAATCATATGATTGCTTTGGATCTTTTGGGGAACTTTTTGAATAATAGAGAGAACTCGGATACCGTACA AGAATTACTTCTAGCTTCAAAAATTTGTGGAGACAACATGGTTTGTGTTGAAGATGGAATCAAATATGCTAACAAAGCCATTTCTCAGTTGCATGGAAAA TGCATGCAGATGTTAGCTATTACAAATTGCATACTAGGTGTTCTACTGTCCTCAAAATCGAGGTTAATTGGTTTTGAATCCGAGAAGGTTTTGATGCAGT CTAAAGCACTCAATGCTCTAGGAACTGCTGAAAGAATGATGAGGGAAAGTGATCCATACATTGTCCTTAATCTTTGTTTAGAATATGCTGAGCAGAGGAA GTTGAGCATTGCTTTTTATCATGCAGAGAAACTGGTTGCCCTTGAAGGTGGATCTAGTATTACCGGATATATACTACTGGCACGAATTTTATCGGCTCAA AAGAATTTTGTAGATGCAGAGATTGTTATTGATGCAGCTATAGATCAATGTGGAAAATGGGAACAAGGAGTTTTGTTGAGAACTAAAGCTAAACTGCGGA TCGCGCAGGGAAAATTAAAGAATGCAATCGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTACAGAAAAAAAGTTCAGTTATTTCAAGTAAAGTTAT GAAGAATAAGGGAAACTGCGACAGAAGACTGGAAATGGAAATTTGGCACGATTTAGCCAACGTGTACACATCGTTATCGCAGTGGCAGGACGCTGAAGTT TGTCTTGCAAAATCTCAGGCCATTAATCCCTATTCTGCTTCTAGATGGCATTCCACAGGCCTACTTTTTGAAGCCAGAGGACTTCATCAAGAGGCTATGA AATCATTTAGAAAAGCATTAGATATTGATCCCAACCATGTCCCAAGTTTGATATGCACTGCTGGTGTTATGAGACATCTTGGTTGTCAATCATCTCCAAT CATTAGAAGCCTTCTCACTGATGCACTATGGCTTGACAGGACTAACCCATCTACTTGGTACAATCTTGGATTGCTCTACAAAGATGATTTCGGGATATCG TCGCCGGAAGCTGCTGAATGCTTTCAGGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAGCCAATTTTGCTACAATTTTTGATTC TTTTTTGTTTTTGTTTGAAACATATATCATAGTGAGTTATAAGTCTGGTTGTAAAGTTCAGCTTTCTATAACTTTTGCATAGGTCATTTTGTTAGAACAC AGCTAATGTCATTAATCTTATGTTGATAGAAAAAATTAGAGAAGTAATGTAATTAATCACTTCTATTTGGTGATTTTGTTCAGCAACTTATGATTTTATA TTTTTATATATCATCTCGCACACTACTTTAATGTGCATGCATTAGTAGTGGATTGGCCTTGTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_137259; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_340199
| Blastp | Protein NPGR2 from Arabidopsis with 47.57% of identity |
|---|---|
| Blastx | Protein NPGR2 from Arabidopsis with 50.18% of identity |
| Eggnog | Tetratricopeptide repeat(ENOG410XQ09) |
| Kegg | Link to kegg annotations (AT4G28600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428019.1) |
| Pfam | Tetratricopeptide repeat (PF13181.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |