| Id Trinity | TRINITY_DN44733_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_335130 |
| Sequence | AGTGGTTTAACAATAGACCTAGTTTTGTCGAAGGACACTGATTCATTTTCCCTTTCCCGCGTTGAAAAATCCAATTAATGAAAGGCCACTAACTAGGGTT TAACCTTCTTCACTGAAACACTAACACTGAGCTGTGAGATCCACAATGGACGTTGAAATGGACACTTCTCCTCACTTATTCGACCCTCACAATCTCTCTA CCAGAGAGAAGTTCCGCAGATACGGGTTCATCTCTCTCTCTCTCTCTCTCTCTCTATTTGTTCTTGTTCCTCGGTTAAATTAATGCCTCTTTCATTCTTT AATTTTAATTTTGTTTGCTATATGAACCTGCATAACCGTTTACTTGTTTTCACTTTACATCGGAGGCTCACCTTTTTCTTCCTAGATTAGGTCTTGTGCA TTTAGGGTTCATGTCTCATTAGTAATGGATGCACTCGTTCATTTATTTTTTGGATGCATCAGAACATGTTGTAATAAAACTTGTGTGGTAGAATATAAGA TTAATGGTGTCAGTGGTGTGTTTGAGTATACAGCTCAGTTAGGTGCTAATTCAATAAGGTCTTTTTGAAATAAGCTAAAATGAGCTTATTACAGAAGTTT TTCTTATAAGCTTATTGGAATATGTTAAAAAGAGCTTATAAGAAGGTTATCAACTATTTTTATGTTAGTTTTGTAAGTTCATTTTCCTAAGCTGCTCTCA TAAGCCCAAAGAAGCTCTACATTCTTTCAAGCACCTGATATAAAGTAAAACGTTTTGATTCTGGCGAAAAGGATGGAGCTGAAGAGTAAAGACCTGCTAA ACATTTCTGCCCATGAATCAAATGCTACATTAATATGAATATGCCAAATTATGCTACATTTTTTCGTTGCACCATTTGAGTTCTTTGTAACAGTTACTTG CTTTCTCGATTAGCCTTTGTTGTGTCGTTTTTGTGAAAAATTGTGTCAACTTTCAACAATGCAATTCATGCAGGAAGAGGCACTCAAGTTCAGGTGCTTC AGCACATGAAAACTCAGCTTCAAAGCTAAGTGAAACTGGGCTCTTTTATGATGGACAGAACATTCATAGTCCTACTAATGCAGCACTTTTTCTTGAAAAT ATCAAACAAGAGGTTGATGACTTTGAAGAAAAGACTCCATATTCCTCTAGAAAGAGGCTATCTGCTGATATTCCTGGAGTCCCTGGTGTGGATGCTGGTT TTGACTCTGTACGTCACTCGTTAAAGGCGTGTAAGCAAGAGGGTGATTCGTTGGGAGATGGTGCAGAATCAATTTTCACTTTGTTTGCATCTCTGCTTGA TTCTTCTCTGCAAGGATTAATGCCTTTTCCTGATCTGATACTGAGATTCGAAGATGCATGTCGAAATGTTTCAGAGTCTACCAGGTATGGTTTGAATTTA AGGCATCGGGTGGTTGAAGATAAATTGATGAGGCAGAAGGCCCAGTTCTTGCTTGATGAGGCGGCAACATGGTCTCTCCTATGGTTCCTTTATGGGAAAG TTACTGAAGAACTATCTAAAGATCAAATACTGGTGTCAGAAACCTCTCATGTAGTGGCTTGTGAGTTTGTTGCAGAGGACCATACAGCTCAGTTAAGCCT TCGGATAGTCCAGTGGTTAGAAGGCTTAGCTTCTAAAGCACTTGACTTGGAAGCAAAGGTGCGTGGATCTCATGTTGGTAGTTATCTCCCCAGTTCTGGA GTTTGGCATCATACTCAGCGTTACCTAAAGAAAGGAGCTTCCGACATGAATGTTGTTCATCACCTGGACTTTGATGCCCCAACACGTGAAAATGCAAATA TTCTGCCTGATGACAAGAAACAAGATGAATCTCTTTTAGAAGATCTGTGGACTCTTTTAAGGGCTGGAAGACTAGAAGAGGCATGTGGACTTTGTCGTTC TGCTGGACAGCCATGGAGAGCTGCCTCTCTATGCCCATTTGGCGATTTGAACCAATTTCCTTCCATCGACACTCTGGTAAAGAATGGTAAAAATAGAACC TTACAAGCTGTAGAATTTGAAAGTGGCATTGGTCATCAGTGGCATCTTTGGAAATGGGCTTCATATTGTGCATCAGAGAAAATGGCAGAGCTTGGTGGGA AATATGAAGCAGCTGTATATGCAGCTCAATGTAGCAACCTAAAACAGATGCTTCCACTCTGCACTGACTGGGAGTCAGCATGCTGGGCAATGGCAAAGTC TTGGCTAGATGTTCAAGTGGACTTGGAAGTCACTCGTTCACTGCCAGGGGGAGTTGATCAACTTAGAACTTTTGGTGATGCAATTGATGGAAGCCATGGA CTTGCTAATGGTTCCATTGACGCTTCAAATGGACCTGAAAATTGGCCAATTCAAGTTTTGAATCAGCAACCACGACATATTTCGTCTCTTCTTCAGAAAC TTCATTCAGGGGAATTGATCCATGAAGCTGTTACTCGACAGTGCAAAGAGCAACAGCGACAAGTTCAGATGGCTTTAATGCTAGCGGACATACCACATAT ACTAGATCTTATATGGTCATGGATAGCACCTTCAGAAGACGACCAAAATGTATTTAGGCCCCATGGAGATCCTCAAATGATACGATTTGGTGCACATCTT GTCCTTGTGCTTAGATATTTACTTGCCGAGCAAATGAAGGATACCTTCAGAGACAAGATTCTAAGTGTTGGTGATAACATTCTGCATGTGTATGCTCTTT TTCTCTTTTCGAAGGAGCATGAAGAGTTGGTGGGCATATATGCTTCTCAGCTTGCAGCTCACCGCTGTATCGACCTCTTTGTGCATATGATGGAACTTAG GCTGAACAGCAGCATACATGTCAAATACAAGATATTTGTTTCGGCTATGGAGTATTTACCGTTTTCTTCTGTGGATGATTCTAAGAGCAACTTTGAAGAC ATTATTGAGAGAATTTTGTTGAGATCTCGAGAGGTCAAGGTCAGCAAATATGATAACCTGTCAGATGTTGCAGAACAGCACAGATTACAGAGTCTTGAAA AAGCTAAAGTCATTCAATGGCTTTGCTTTACACCACCATCCACAATTACTAATGTCAAAGATGTTAGCGAAAAACTTCTTCTCCGAGCATTGGTACACAG GTAGGTCATGTGTCATACTATATGCCTCATCATATTGGATTATCTGATAAGCTGTGCTTCTGAAAGTCAGACCAACAAAAGTGATGAAACCTAGGAATGG TGTTGGACCTTTCACCCTTAATTATTGTATAAATGTTTGCCATATCATGTCAGTACACTATTGACTGCCTATTTCATTTTGTATTCGACATTCTGGAATC TGAAAATATGAATTTCCTAGGTTTAAGTAAGACTCTGATCTTTGTAATCCTCATGTTGCTAATTGGTGCATATATTTTTGACTTAGCAGAAAATCTAATA CATCCCTGCCACTTCACTCTTGCAGTTTAATTTTACCCCTACTTCTGAATTTTAACATTTTTTCTTTCCATTTAGCAACATACTTTTCAGGGAGTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_138240; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_335130
| Blastp | Nuclear pore complex protein NUP107 from Arabidopsis with 69.53% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP107 from Arabidopsis with 65.12% of identity |
| Eggnog | nuclear pore complex protein(ENOG410XRUG) |
| Kegg | Link to kegg annotations (AT3G14120) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460751.1) |
| Pfam | Nuclear pore protein 84 / 107 (PF04121.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |