| Id Trinity | TRINITY_DN45216_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_400934 |
| Sequence | GAAAAGGAGAAGCATCCTAAACACACGTTGAAGAACATCGCACACATTCTGCTTTTTTCTCTCTCTAAATCCAAAGCTTCTAATTCCAACTTCCTCATTC ATCCAATTTCTTCTGCAGTTGCGGTTGCAGATTAGAAAAAAACAATAAAAGAATATGAACAAGGATAAAATCTTCAAGTTAGCTAAGGGCTTCAGGGGGA GAGCCAAGAATTGCATAAGGATAGCCAGGGAGAGGGTGGAGAAGGCCTTGCAATATTCATACAGAGACCGCCGTAACAAAAAGCGGGACATGCGATCCCT TTGGATACAAAGGATTAATGCCGGCACTCGCCTTCATGGTGTATGTCTTCTGTTCCCTTTGTTCTCTTACTAATTAATAATGCACATACAATTTATCCTG TAGAATTCAATACTGGATCAACAAAATTGCTTCTAATGTTTTCATTAAAAATTAATTTTTGATTGAAATTTTGGTACATGTATTGTAGTACTCACACATG GTGAAAACTATTTTTACCCATTGGGAGAGACATAACGAGTGGTTAGTTCATGTCTTTGAATTAAATAATGTTTATTAACCTTGAAAGGTTACATTTTGTG ATTTGTGGTCTATGATAAATTGATAATGTTATTTTCTGTAACTTGCACAAGCATCTTCTGTGAAACAAGATGGAACTTGTGATGAACTGAATACAGGGTG TGTGGACGATACATTTTAACATCAAATGGAGTGCATATTAGCTTTACCTGCATCTGGAATGTGTAAATTTTCTTCTGCATTGCATAATTGTCTCATGCAT CAGCAACTGTTGGTCCCCTTATTATTTAGGTTCGTGTTTAGTATAGATACATTTTCTCCATGCACTGTGAGGTATCTAATCTCCAGGCTTTCTGCTTGAA TCGATCCGTTGTTTTTATTTGCCAGGTAAATTATGGAAACTTCATGCATGGACTGTTGAAGGAGAATATCCAACTTAACAGAAAGGTTCTATCAGAGTTA TCCATGCACGAACCATATAGCTTCAAGGCGCTAGTGGATATATCTCAAAAGGCATTTCCAGGAAACAAGAATGTGGTGATTCCTCCAAGAAAGGTGGCTA TTTAGAGCATTTGGCACTTCAGCAAACTGCTATATTAGAGCTAAGTTTCTATCACAATCGTTAAGGATCTTTGAGGATGTTGGGTTTGGTACACTACAAC TCACTATCAATTTGTTTGCCTTTGATTTTCTTGATCCTGTTGAGTACAATTTCATTCATGATGTTACTCCTCCGACCTCTCTTTTACTTGCTTCAGTATC AGTAATTGATCAAATTTCAGCTTTGTTCTGAACCCAAGATTACATGTTACAATTAGTTAGCTGTTGCATAATGACAAACAGTTACCTTGGACAAATTTTT ATCCCTAAAAAAATAAAACCACTTGGATGAGTAGAGCAGCTACCATGAGCTTATACTATAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_139154; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_400934
| Blastp | - |
|---|---|
| Blastx | 50S ribosomal protein L20 from Rhodospirillum with 73.33% of identity |
| Eggnog | Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity)(COG0292) |
| Kegg | Link to kegg annotations (RC1_2313) |
| CantataDB | Link to cantataDB annotations (CNT0001777) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_016167189.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |