| Id Trinity | TRINITY_DN45216_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_400935 |
| Sequence | GAAAAGGAGAAGCATCCTAAACACACGTTGAAGAACATCGCACACATTCTGCTTTTTTCTCTCTCTAAATCCAAAGCTTCTAATTCCAACTTCCTCATTC ATCCAATTTCTTCTGCAGATTAGAAAAAAACAATAAAAGAATATGAACAAGGATAAAATCTTCAAGTTAGCTAAGGGCTTCAGGGGGAGAGCCAAGAATT GCATAAGGATAGCCAGGGAGAGGGTGGAGAAGGCCTTGCAATATTCATACAGAGACCGCCGTAACAAAAAGCGGGACATGCGATCCCTTTGGATACAAAG GATTAATGCCGGCACTCGCCTTCATGGTGTATGTCTTCTGTTCCCTTTGTTCTCTTACTAATTAATAATGCACATACAATTTATCCTGTAGAATTCAATA CTGGATCAACAAAATTGCTTCTAATGTTTTCATTAAAAATTAATTTTTGATTGAAATTTTGGTACATGTATTGTAGTACTCACACATGGTGAAAACTATT TTTACCCATTGGGAGAGACATAACGAGTGCATCTTCTGTGAAACAAGATGGAACTTGTGATGAACTGAATACAGGGTGTGTGGACGATACATTTTAACAT CAAATGGAGTGCATATTAGCTTTACCTGCATCTGGAATGTGTAAATTTTCTTCTGCATTGCATAATTGTCTCATGCATCAGCAACTGTTGGTCCCCTTAT TATTTAGGTAAATTATGGAAACTTCATGCATGGACTGTTGAAGGAGAATATCCAACTTAACAGAAAGGTTCTATCAGAGTTATCCATGCACGAACCATAT AGCTTCAAGGCGCTAGTGGATATATCTCAAAAGGCATTTCCAGGAAACAAGAATGTGGTGATTCCTCCAAGAAAGGTGGCTATTTAGAGCATTTGGCACT TCAGCAAACTGCTATATTAGAGCTAAGTTTCTATCACAATCGTTAAGGATCTTTGAGGATGTTGGGTTTGGTACACTACAACTCACTATCAATTTGTTTG CCTTTGATTTTCTTGATCCTGTTGAGTACAATTTCATTCATGATGTTACTCCTCCGACCTCTCTTTTACTTGCTTCAGTATCAGTAATTGATCAAATTTC AGCTTTGTTCTGAACCCAAGATTACATGTTACAATTAGTTAGCTGTTGCATAATGACAAACAGTTACCTTGGACAAATTTTTATCCCTAAAAAAATAAAA CCACTTGGATGAGTAGAGCAGCTACCATGAGCTTATACTATAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_139154; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_400935
| Blastp | - |
|---|---|
| Blastx | 50S ribosomal protein L20 from Rhodospirillum with 73.33% of identity |
| Eggnog | Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity)(COG0292) |
| Kegg | Link to kegg annotations (RC1_2313) |
| CantataDB | Link to cantataDB annotations (CNT0001777) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_016167189.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |