Ll_transcript_281213

Id TrinityTRINITY_DN46107_c1_g1_i13
Name TranscriptLl_transcript_281213
SequenceATTAGGTATGTTTCTTAATCTCTCTTTCGATCTATTAAACGACGATTTTCGATGTCGTTTCATGCTGTTGATAGTGTTAATCGATTAATGTTTGGTTATG GTAGTTGAAGGAAAACGATGTCGCACAGAAAATTTGAGCACCCAAGGCATGGATCACTTGGATTTCTTCCAAGGAAGCGAGCTTCTCGTCAACGCGGAAA AGTGAAGGCTTTCCCAAAAGATGACCAAAGTAAACCATGCAGATTGACTTCCTTTTTGGGGTACAAGGCTGGGATGACCCACATTGTTAGAGAAGTTGAG AAGCCTGGATCTAGTAAGTGTTTTTTGTTGACTTTGTCAAGGATGGATGTAGAAGCTGTCATGGAGTAATATTTTGTTGATGTTATGTAGCCAAAATATT ATCTCTTTGTTTGTGTAAAACATGGGCTAGGCATTTGTGTATCTGGTGCCATATAAAGTTGTGAATGGTGTGCCTGTTTTTCAATTCTGACATTATCTTT TTAAATATACATCAGTTTTTGTTTGAAACGATGAGTACATGTTTTGGGCGAAGTCATTAGTAAGATATTGTGAACTTTTTGCTTTAATGTATGTATTATT GGAGTGTTAATGGTCCTTCAGCTTTTAGAATATAGTGTCTCTATGTTATGTAATGTTAGTGATTGTGATTCATAGTTGTTTTGCTATGTTCCTGATAACA TTTTATCTATTACAGAGCTTCATAAGAAAGAGACATGTGAGGCTGTGACTATCATTGAGACACCTCCTTTGGTTGTGGTTGGAGTGGTGGGATATGTCAA GACACCTCGTGGCCTCCGCACTCTGAATACTGTTTGGGCACAACATCTAAGCGAAGAAGTCAAGAGACGTTTCTACAAGAACTGGTCCAAATCTAAGAAG ACGGCTTTCACCAAGTATTCAAAAAGTTATGAAACCGAGGAAGGAAAGAAAGGCATTGAATCTCAACTTGAGAAATTGAAGAAATATGCAACTGTCATTC GTGTTCTTGCTCATACTCAGGTAATGCAGTGTTCTCATTGGATATTGTTTATGACTGACTTCTGCATCTTGTACAATCTAGTCAGTAGGCTGGTGAATGA TCTCTCTGTCATTAATGCTAGATTTTGGTTTTTGGTGAGGTAGATTAGTTCATTATCATATGTAGTTGTTAAATCTATCAGGTGATCAGTGCCACAGCTC TTATCATATGTAGTTGTAAGTAATAAGTAGTAGTCCTTCTTTGTTTACTGTAGATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAGGCACATCTGATGGA GATCCAAGTTAATGGTGGTACAATAGCTCAGAAGGTGGATTATGCATACAACTTCTTTGAGAAGCAAATCCCAGTGAATGCAGTTTTCCAAAAAGACGAG ATGATTGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTAACACGTTGGGGTGTCACTCGCCTACCTCGTAAAACACATCGGGGTCTGA GGAAGGTTGCTTGCATTGGTGCTTGGCATCCGGCTCGTGTTTCTTTCACAGTGGCCAGGGCTGGACAGAATGGATATCATCACCGAACTGAGCTGAACAA AAAGGTTTACAAAGTTGGCAAATCCGGAGAAGAATCACATACAGCCATCACTGAATTTGACAGGTATGTTTGTTATCGGCTATCATTCTAGCTTGTCCTA TAATTCTGGCTTCATGATTATAACATTTTAGTACCCTTTTGCTAACACAACAGGACTGAGAAGGATATTACTCCTATGGGTGGATTTCCTCATTATGGTG TGGTGAATCATGATTATCTTATGGTGAAGGGAGGCTGTGTTGGACCCAAAAAGAGAGTTGTAACTCTTCGTCAGTCACTACTGAAGCAAACTTCTCGTTT GGCTCTTGAAGAGATCAAACTCAAGTTTGTAGATACCTCATCCAAGTTTGGACATGGCAGGTTCCAAACCACTGAGGAGAAACAGAAGTTTTATGGCCGT GTGAAGGCTTAATTTCTGGATTATTTTTCTTTTTGCTGTGTTTTGGAATAGCTATACCGTTTATTGGATATTTTTGCATATTTTGCTTTCAATTTTGTCG CATAGTTTTGTATTTTCTTAATAAGATACAATAGGTACTGTTACTGAATTGAAAAACCAGTGAATCAAACCCAGTTTTAAATAGAGTATACAATAACAAT AGTTTTTGā€ƒBLAST
Tissuepods
Gene nameLI_gene_142290; 
Additional informationdetails; 

Expression of Ll_transcript_281213

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_281213

Blastp60S ribosomal protein L3 from Oryza sativa with 90.24% of identity
Blastx60S ribosomal protein L3 from Oryza sativa with 78.15% of identity
EggnogOne of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity)(COG0087)
KeggLink to kegg annotations (4351604)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019434008.1)
PfamRibosomal protein L3 (PF00297.21)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;