Ll_transcript_520765

• Id Trinity: TRINITY_DN46512_c1_g1_i6
• Name Transcript: Ll_transcript_520765
• Sequence: ATAAAAACCCTAACTAACGCAGCACACTATATAAGTTGGTTTGTATTGAGAAACCCTAGCTGGATATTCAGATCCTCAATCGTCCAACACTAGCGGCGTT GTATCTCCGACAACTCTTCCGCAACCAAAATGTCTCTTGTGGCAAACGAGGATTTCCAGCACATTCTGCGTGTGCTCAACACCAATGTTGATGGGAAGCA GAAGATCGTGTTCGCTCTTACCTCAATCAAGGGTATTGGTAGGAGACTCGCTAACATTGCTTGCAAGAAAGCTGATGTTGACATGAACAAGAGAGCTGGT GAGTTAACTGCTGCTGAGCTGGATAACATTATGACCGTGGTCGCCAACCCACGACAATTCAAGATCCCGGACTGGTTTCTGAATAGGAAGAAGGATTATA AGGATGGCAAGTTTTCTCAAGTTGTTTCTAATGCACTTGACATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGGTCCGTAAAATGTTTTTG GTCGTTTTTTGTGTGAAATGAATGTTTAGCTGTAGCTGAACCATATTGATGTTGAGATTGTTTTGTGTAAGTCAATAGAATTCTTAATGAAATGCTTTTT TAAAAGCTTAAAATAGTGAGTATGATAACGTTTTGGCTGATTGTGCAACTTCTAAATGCTAGTAAATCCAAGTAAGCATATAATTGACATACATTATTTC CTATTGATGAACATCTAATAAAAAAATCCTAAGCATATAGGCTCCTATTTTATTGGGTTTGCAAATGGGATTATGGTTTCATGAATTGTTGTATTTAACC CTATATGTATTTTAGATAAAGGGTAGTACACTGATACCTATGTGGCTGAAGATATGTGTTTAAAATAAGCATTTGTTGACCATGTTAAATGATCTAATAG AGATATATCCTCGGATATGATGAGAACATGCTTGCACTCTCTGTTGTTTGTGCCCATTTGATACTTGGGAGTTTTTGATTTCACTCCCAAATGTACCAAC ATGTTTGTATCTTGCTTTATTCGTGATGTATTATCCAGTTGGTGATTTGCTGTCAATTTCAATATATTTTTAATTAGGTTTTCTTGTGGTCACCTTTGTT CGTTTTATAACTTTGTAATTATTCTCTTTTATAATATTTCATGTCATAATGCTGTAGTTATTACTAATATTTTAGGAATTATTTTCTTTTCTATGACATC ATTATCTATCCCCATCATTACTGAAATGACTATCTCAGTCGAATAGCTGCAAGAAGTCCGCGTAATCACTGCATATACAACTATCCTTAATGACAATATC TTAGAACATTTATTTGGAAGTTATACCATTAACCTCTGAATATACCACATATCAGATATGTCCTGAGATGATTTGCGCAGGCCATACATTTTAACTTTCC CCATTCTGTGATTACCTTTATGCTTAAGGATTTCAGCGGAGAACTTGTTAATGCATTGAATGATTACTTGCTGCTGTTAAAGCACTTACATCTGATTTTC ATACTATGATGCAGAAACCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGGCAGCATACCAAGACTACTGGCCGCAGAGGAAAAACTATTG GTGTGTCCAAGAAGCGTTAAGTTTTTATATTTGTCTTGGAGATTAGATAAATGTGGAAGAGGATAATTTGAAGTACATTAGACTTGTTTTTGGATACCAA CTTTGTATTGGCTTTCAATGCCATGACAATTTCGATTTTGTTGTTATTTGCTTTAAATTTTCGTTTAGTTGATTGAACGTATTCCGTGCTGTAGAAACCT TAAATAGTATTTGATAAATTTACTTATTCACCCGTCCTCTACAAGAAATTGTTATTTTTTAGCAGCCTAATTATTTAAATTTTTCGTGTGGTGTTCTTGG GTACACAGATTTACTAACTATAATATAATGAAAGGAGTTCTAGCCTTCTAGGTTTTTTTGTTAAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_145176;
• Additional information: details;

Expression of Ll_transcript_520765

FPKM

• PAB: 0.3
• PNAB: 1.4
• PS1: 0.7
• PS2: 1
• PS3: 1.3
• PW1: 0.3
• PW2: 0.6
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_520765

• Blastp: 40S ribosomal protein S18 from Arabidopsis with 84.73% of identity
• Blastx: 40S ribosomal protein S18 from Arabidopsis with 84.73% of identity
• Eggnog: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits(COG0099)
• Kegg: Link to kegg annotations (AT1G22780)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435035.1)
• Pfam: Ribosomal protein S13/S18 (PF00416.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;