Ll_transcript_522211

• Id Trinity: TRINITY_DN46598_c5_g1_i5
• Name Transcript: Ll_transcript_522211
• Sequence: ATCCACAACAACACTCTCTCAGAGAATGTGTTATGAGTTGAGAACATAACATAACATAGCACAGTCTTCTAACTTCTTCACTTCACTTTCCCATTTTATT CTTCTTTACCGATTACCGTCGTTACCGGTGACGAATAGGTGTTAAATGAGTGAGATCTGAGTTGGTTAATTGAGAATGGGAAGTGTTTCGTCTGAAGATG GTTCCGACCAACAGAGTGACCGTTGCGGCAGCTACACACTCAGTGCTGACGTCAGCGAATCTGAGAGTTCCACCAGTTTCTGCGGTGCTCGCCGTTTCGA CACCGAAGGTGCCTCCTCCTCCGCCAATCTCTCCCCGCTTCCCGCCGTTGCTGGCAAAGATGTGCTTCTCTGGAATCACAACCCTAAAAAACGTGACCTA GATTTGTCAGAAGTGGAAATGATGAAGGAGAGGTTCGCGAAGCTGCTTTTAGGGGAAGATATGTCTGGTGGAGGCAAAGGAGTCTGCACTGCGCTTGCAA TCTCAAATGCAATAACAAATCTCTCTGCAACTGTGTTTGGTGAGCTATGGAGGTTAGAGCCCCTAGCAGCACCGAAAAAGGCTATGTGGCGTAGGGAAAT GGAATGGCTCTTATGCGTAAGCGATTCTATTGTGGAGCTCGTGCCAGCTGTGCAGCAGTTCCCTGGTGGTGGAACATATGAAGTTATGGCTATGCGTCCT CGCTCCGATTTGTTTATCAATTTGCCAGCTTTGAAGAAGCTTGATGGAATGCTGCTTGGTATGCTTGATGGATTTGAAGATACACAGTTTTGGTATGTTG ATAAGGGAATTATATTGGGCGATTCCAAGGATTGTGATGACTATAATGGTAGACCTTCAGTTAGGCAAGAGGAGAAATGGTGGCTTCCTTCGGCTAAGGT ACCGCCAAATGGCTTGTCTGAGATTGATCGGAAGAGGTTGCAGCAGTGCAGGGATTGCACCAACCAGATATTAAAGGCTGCCATGGCAATTAATAGTTCT GTTCTTGCAGAAATGGAAATTCCTCGTGCTTACATTGGATCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACGTAACTGCTG ACCAGTTCTCACCTGAGTGTCTCCTTGATTGCCTGGATCTCTCATCAGAGCACCACACTTTGGATGTAGCTAATAGAATTGAGGCTGCCGTGCATGTATG GCGGCTGAAGGACAGCAAGAAACATTCAAATTCAGTGAAAGCCAGACGCTCTTGGGGTGGAAAGGTGAAGGGCCTGGTTGCTAACAATGAAAGGAACCAT TTTCTTTCTCAACGAGCAGAGACCCTTCTGCAAAGCTTGAAACACCGGTTTCCAGGGCTCCCTCAAACCGCACTAGATATGGCCAAGATACAATATAATA AGGATGTAGGGCAATCTATTCTTGAAAGCTATTCAAGGGTGATGGAGAGCTTGGCCTTTAACATAATAGCCAGGATTGATGATGTCCTTTATGTTGATGA CACTGTAAAGCGCCGTTCAGCCGCAGAGTCTATCTCGCTCTTCAGCCGAGGTGGTTTTGGTGGTATGCCTATTCAGAAGAGAATGTCTCCAAGTCCATTC TCAATTCAACACACCCCATATGCCTCTCCCTTTGCAACCCCATCTTTCTGTTCCTCCTCTCCCATTACTGGGAGCCCATGCAGTCCTCAAATAACACCTA CCGTGAAGCGGATCGGTCGAAAGGAGGCAACGGATTCTAAGCCTGAAAAGTTGGTATCCGCTGATTTGGAGAGGGTATGGTCATTCACGGGAAACCTTAG TTCAAGAACAGCTTCTGGTAATGCCCCAGAAAGAGACTAAGTTCTACAATTTATATTACTTGCATTTCTGGCTAAAGCCTTTGATCCCACTCCTTGTATA TGAGGTTTTAATTTTTGTATATTTCTAGGCAGTACAAGTAGAATTATGTTGAAAGATTATGTCAATGAATCATTCTAGAGGCCACTCTCAATATGCATTT ATAATTGCATATGCTAAATATGGTTCTGGACTTTATAACTGACTCAAGATCAGCATTAGTCTTCTCCCTTGCCCTCCTTGTTACCATGAAATTTTCAACT GAATTTAATTAGGTCAAAAGTTAGGATAATTTTCAG
• Tissue: pods
• Gene name: LI_gene_145782;
• Additional information: details;

Expression of Ll_transcript_522211

FPKM

• PAB: 1.7
• PNAB: 24.5
• PS1: 25.7
• PS2: 11.5
• PS3: 18
• PW1: 28.4
• PW2: 27.7
• PW3: 24.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_522211

• Blastp: Rop guanine nucleotide exchange factor 1 from Arabidopsis with 66.49% of identity
• Blastx: Rop guanine nucleotide exchange factor 1 from Arabidopsis with 66.14% of identity
• Eggnog: rop guanine nucleotide exchange factor(ENOG4110DIX)
• Kegg: Link to kegg annotations (AT4G38430)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413138.1)
• Pfam: PRONE (Plant-specific Rop nucleotide exchanger) (PF03759.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;