Ll_transcript_513572

• Id Trinity: TRINITY_DN46822_c8_g2_i8
• Name Transcript: Ll_transcript_513572
• Sequence: TAATCGTTAAGCTTCAATTCCAAAAGTAGATGAGAAGAACTACGAATACGAAGAAGAACCAACCACAGTAACAACAAAGCACAAATGGATTTCACTGAGA AAGATCTTTTCGGCGAAGATTCCGACAACGATAAAGACGGGACCCACTCTTCTTCCCGTTCTTCTTCACCATCGTCCTCCTCTTCCTCCTCTTCATCATC TTCCTCTTCTTCCTCCAACGCCAGTCACCGCGGCGGCGCCGACTCCAGCTCCACCAGTGGAAGCGGCGGCGGCGTTGATGACGATGAAGAAGATAATACC AGCAAAGCATATTCCTCTCATCAAGATCATGATGAAGAAGACTATAACGAAGATAGAGATCTATTTGATTCTGATAATGAAGATTACTGTAAAACCCTCG CTAAAAGTCCTCACCCTATTCCTGTATTGCCTGCCATTCGCAACGTTAATAATCCGGGTAGAGGGGGTTTTGGTCGTGGTCGATGGCAGCCCGGACATCA AAATGATAGGGGAGCAGGCCTTCTTCCTCGTCCTGGACCATATCCGCACAGACAAAACTTTGGGTATGGTAACAGGTTTCAGAATGGCCATCGTGATGAA CGATTTGTATCTGATATGAAGCTTACCAAGAGTGAAGAGACTCTGTCAAGGAAGTGCATTGCTTTTCAAGAGCCATGTGAAATTGGCTGCTATAGTCGGG TAGAAGGCGGGCAAGTATATTTTGACGATCGTAGCTTGAGGCTTTTTAAGCGCCTTATAACTGAAGATGTTGGAGCTGATTTGAATGAAGGTTATGATAC ATTTGTACCTAAAAAAGACTTAGGCTCAGAGGGCTTCGGCGATCTTCTTGCTTGTATTAGAGATAAAAATATCCCCCTTCAAAATATTCATTTTGTGACA TATCGTAACAATCTTAATAAGATACTTGCTACAGCTTATGCCCGTCACGAGCCTTGGGAAATGGGGGTGCACAAAAGGAATGGTGTTGTCTATCTTGATG TGCATAGCCTACCAGAGAGACCACAAAGGGATATTGACCGCAGGAGATGTTATTGGGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATCGAGC TGTTGGAGAGGGGATACATCATGTTGATGCAAATGTTGAATTCTGTTCTTTGATTAAGACAAAATTAGGGGCTCACCGTATCTTGATGGGTGCTGAGATG GATTGCTGTGATTCGACTGATGATGGAAAGAGGTTTTATGTGGAGTTAAAGACAAGTCGTGAGTTGGATTATCATACTGAGGAAAGATTTGAGAGGGAGA AACTACTAAAGTATTGGATTCAATCATTCCTGGCTGGTGTCCCATATATTGTCATAGGGTTTAGGGATGACGGTGGTCGTCTTGTTCGGACAGAAAGACT TAGAACCAAAGATATAACACAGAGGGTAAAAACAAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCATTTGCTGATGAAGTGTTATGCTGGCTTTATGGA ACCGTCAAAGAAAATGAAGATTACATATTGCAGTTTGCCCCACCTTTCAATCGTTTGGAACTTTTGCAAGGACAATCATGCCCAGATGTAATTACTAGTC ATCTGGATCTTTTGTAAACAACTATTTGAAACTTAACTATTATTTAAACAATGGAAGAGGGAATCAAATTGGGATTCCCCTGTAGCTTTAATTAGGACTT GAACAACGAGGATATTTTGGTACTCTACGTGATTACTGAGACATTTTAATATAAAAACTTGCGGAAAATATTATGCTGTTGTTATTTTGGAAAAAAA
• Tissue: pods
• Gene name: LI_gene_147455;
• Additional information: details;

Expression of Ll_transcript_513572

FPKM

• PAB: 12.2
• PNAB: 17.2
• PS1: 28.4
• PS2: 15.2
• PS3: 24
• PW1: 15.3
• PW2: 14.4
• PW3: 15.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_513572

• Blastp: Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 74.7% of identity
• Blastx: Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 74.76% of identity
• Eggnog: Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5' end cap mRNAs such as unmethylated 5' end-capped RNA to release GpppN and 5' end monophosphate RNA. Also possesses RNA 5'-pyrophosphohydrolase activity by hydrolyzing the 5' end triphosphate to release pyrophosphates(ENOG410ZAFR)
• Kegg: Link to kegg annotations (AT4G17620)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422194.1)
• Pfam: RAI1 like PD-(D/E)XK nuclease (PF08652.10)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;