| Id Trinity | TRINITY_DN46886_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_513169 |
| Sequence | CGCTTTTCAAAGCTTCCTTACTCTCTTCTCTCTCTCTCACACACACAGAGATTCAATTAGGGTTTTCTGTATTCTTGATTCTTCCACTGCAATTCAATCA TGAACATCTTCAGGAAGAAAACATCACCAAAAGAGGCTTTGAGGACAAGCAAGAGAGAAATGTCTGTTGCAACAAGAGGTGAATTACTTAAATTATTGCT TATTTGGAAGTTATACTTGTGAATATATTTGGCTGCATAAATTGAATTGTTTACGTTTATAGTAGTTTTCGTAAATAGTAAGTATTATCTTGCCTATGTA AGTTGTAATCTGTAAGCTTGTGTTTCACTTATTTGTTGAATCTTCTCTTTCCCTTTTGGCTTTTCTCGCTTAGGGTCACTTTGGTATTAGTCGAAAAATG GGGGTGCCTACCGATTGGTTGTGTCTTTTGAATCCTTATGTCCCTTTCAAATTTTCAGCAGAAAGTGAGCATATTGATCTAACTGGTTGAGTCAAGAGCT AACCATTTTTCAATTGTCACTTTTGTTTCTCCAATCTAATTTGCTGTTGCTCCAATTTTTGATATATTTCCAAAATGTTAATTGCTTACCTCAATTGTTT CTTGTCACTTGGAGATTTTTTTAATTTCAAATTAGCTACCATAAATCTAAATTTCACAAAGTTTTCTTTCAAGGCCTTTTCCTTAATTTTTTACCTCATT TTTGTTTCTTCGCTTTAGTTTGTCATTTCTATAATTTTTTGTATATTTCCTTAATGTTCAGTCTTTGCCCATCTGGTTTCTAGTCATCTGGCAATGTCTT TATTGAACTTAACTTAAAAATTAGCTACAGCGGTATTAGTCTATATTTCCTTAATGGGTTTTCTTAAGTGATCCTTGGTTTAGCATCTCTAACCATATAT CTTATTTATGGCTGTACCTTAAAAGGAATTAGAGGAGTTAGCAAGGTTTCACATTTGATATGGTTTTTTAATTTCAGTAGTGAAGTGCCACTCCTATAAC ATATTCCTTTCCTTTTTTGGTTTACTCTTTCTTTATATTTTGCTGTAGGTATTGAAAGAGAGATAGCATCACTTCAGATGGAGGTACACTAATAGTGACC TTGTTAGTGATTTCCTTTCTGTTTCATATTTCTTTTCGGAGTTTCACTCTGTTGTAAAGTGCAGGAGAAAAAATTGGTGGCAGAGATTAAGAAAGAAGCT AAAACTGGAAATGAGGCTGCCACTAGGATCTTGGCTCGTCAGCTTGTTAGGTTACGCCAACAGATAACCAATTTGCAGGGAAGTCGTGCACAGATCAGGG GTGTAGCAACTCACACACAAGCGTTATATGCAAGCACATCAATCTCTACAGGGATGAAGGGTGCGACTAAGGCGATGGTAGCAATGAATAAACAAATGGC ACCAGCAAAACAGGCTAAAGTCATTCAACAGTTCCAAAAGCAATCAGCACAAATGGACATGACCATTGAGATGATGTCAGAATCAATTGATGAAACTTTA GACAAAGATGAAGCCGAGGAGGAAACAGAAAACCTCACTAACCAAGTTCTTGATGAGATTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAG GTCGAATTGGTACAAGGAATACTGAAAATGTTGCTCCAAGATCTGAATCCCAAGATGTTGAAGAACTTGAAAAGAGATTGGCTTCTCTTAGAAGAATATA AAAAGGATGTGAACATCAAATATATATATATGCTGTAGTAATGGCAAGATTGTATAATTGGCACCCCATATTATTACTGAATTTTATGAGGAATGTAATG TGTTAGTTACCATCAAGAATTCTAGTTGTTTGGATCAATGTGCATTTTGGATCAATATGTCCTATGAAAAATAGTCCTACCCTATAATTTCCATTTACAC CAGAGAGGTCTGCTATTCAATCAAATCATTGCATAGTAAACCATATTCTTAGAAAATTAACTTTTGCTTATTTTTTTTTTACCTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_147960; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_513169
| Blastp | Vacuolar protein sorting-associated protein 2 homolog 2 from Arabidopsis with 78.51% of identity |
|---|---|
| Blastx | Vacuolar protein sorting-associated protein 2 homolog 2 from Arabidopsis with 73.09% of identity |
| Eggnog | Charged multivesicular body protein(COG5491) |
| Kegg | Link to kegg annotations (AT5G44560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416056.1) |
| Pfam | Snf7 (PF03357.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |