Id Trinity | TRINITY_DN46893_c1_g1_i3 |
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Name Transcript | Ll_transcript_512460 |
Sequence | GTTTTTTAAAGGATAATTTAATTTATTTTCTTGTTGTAATTTTAATAAAAAAATTCGTAGATCATTCATTGTTTCTGCTCTGCAACAAAAAATGGTAGTT CTTCAATTGAAGAAACGAAGTGATTGAGTATCTGAGACGAAAAAGATCAAAAATTTGAAGGAATACAGAAGAAACCCTAATTTTCATTTTTTGGCGATCG ATCGATCATGTCAACAACAGAACCTCCTCCTTTCCAAGAAGCACCGCGATGTGTTGTCTGTAATTGCAGTTTCAACACCTTCAGAAGAAGGCACCACTGT CGGCGCTGTGGGAGAACATTTTGCAATGAACATTCATCGGATCAAATGGCTTTACCACAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGATTGTT TCAACAATTCACGATCTGAGAAGGGTGTACCACATGCTTCTTCAGATGGAGTAAACAGGGTGACAGATGCAATTTCTAAATTAGACATTGATGAAAAAGA TGATTCAAAAACCAAACCAAATGCAGAGAATAATCAGACTGTATCGGGAGTTAAAGAGTGCAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTATTGCC CCTTCATCTGATCCACTCCCCCAGCAGAAGAAACCTACACCTGTCGTTACAGCTCCATCAAATCCTAAAACTAAGAAGACAGATACTGTTCCAAAAAATA GAGGCTCCAGTTCAACTAGCAGGTTCAGGTACGGAATGGTTAACAGAAATATTTTTGTTGGCAAAATGTATGTTTTGAGCGAGTTCATTCCCATTAGCTT AAAGCCTGAAACCCAGAAGTTAAGGAAACACACATTTCCCACAAAAAGTTGAGGGAATTTCTGTCTAAAGATTCTGGAGTTATGCTTCGGCACTTGGTGG TTCATCGTGTTAGTTTTCTGTTCCTTCTTGTGAACAAAGGAAATGAAGTGACATTGTAGCTTCATCAGGAATTTCTGGTTTATTTTAGCGCGCAGAAATT GCTTTGAGATATGGTACATTAGTCAAGCAATTAAGATTCTCCTTATGTCTAAGTTCATAAATTGGTCATCACTAATTCATTATTTAATCTTGCTATTGAG TGCTTTATGATATCATTATTTGATAGTTAATGATGCAAAAATTTCAGTTCTACATTTAATCTTGGTAATGTAACCAGTGGTACCTCAAACAGACCCCAGA TTGATTATGAAGCTAATGGAGAGGGTTTAAGAGAAGCAATAAAAAGTGGTGATGTTGCTGCTGTGAAGAAACTTCTTAATCAGGGTGTGGATGCAAATTA CCGAGACAAGCAAGGACTTTCTTTATTGCATTTGGCGGCTGTCTTCAATCAAACTGATATAGTTTTCACTCTCATGGACTCCGGGGCAAGCCTGCAATAC AAAAATGCACAAGGAGAAACACCATTAGACTGTGCTCCAGCAACCTTACAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAGCAATGGGCCAAAGCA TTTGAATAATCTATTACATGTATTTGTACCTTATGCTGCAAAGAGAGAAATACTTACCAATTTCTAAAAGTTCCTTGTTAGCAGAACAGAATTTTTCAGC TTCTATATAATGCGACAGACCCGGAGTAAAACTGAGGATTCAGACATTAATAAGATACATCTTTGCAGCTAAGCAACTTAGGCAGTATCCAAGTTGTAAA CTTGTTTGGTGTATGACATAAGTGCATTTTTTAGTATGCATCTTTTTCTTTTCTCTTTTTCTCATTTGATGATGATATTACGGGGAAGAAAAATATAAAC TAAGTGACTTTGGAATGGTGACATTAGAAAATCTTATCTTTTTGTGCTTTTTCTTTCTTTTCCCCACCTTTTTTCCCTTTTCCTTGTATTGCAAGGGTTA AGTCATAACGATCTTCATCTATGTGCTGTTTTCCATCAGCCTCACCCCACCACCCATTCCTCTTTGCTGTGTTCATGGTACATGTTAAACCAACTCATGG AAATGATGCAGTGTGCATATGTTGGATCTGAC BLAST |
Tissue | pods |
Gene name | LI_gene_148015; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_512460
Blastp | Vacuolar protein sorting-associated protein 27 from Nakaseomyces/Candida clade with 42.65% of identity |
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Blastx | Ankyrin repeat and SOCS box protein 9 from Mus with 43.37% of identity |
Eggnog | Zinc finger, FYVE domain containing(ENOG410XNRF) |
Kegg | Link to kegg annotations (CAGL0I05830g) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019419916.1) |
Pfam | FYVE zinc finger (PF01363.20) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |