Ll_transcript_310548

• Id Trinity: TRINITY_DN47172_c1_g4_i1
• Name Transcript: Ll_transcript_310548
• Sequence: TGCTAATGTTTAAATAAAAGATATTTATATGTGAACGTTGAGAGTTGAAGAGCGTAACGTGCAGATGATTAATGGGGAGCTTTTTCTCAGCAAAGTGTGT GGCGTTGCACCAGTTAGCCGCAACTCACTCCTTTCCTTGATAAGCAAAGCGTGCACCCTCCCTCACCTTACCCAAACCCACGCTCAGGTCATCCTCAATG GCTTCCAATTCGACCTCGCCACCGTCACCAAACTCACTCAGAAGCTCTTCGACCTACGCGCCACGCGCCACGCTCGTTCCCTCTTCTTCTCCATCCCTAA ACCCGATATCTTCCTCTTCAACGTTCTCATTAGAGGCTTCTCCCTCCACGCTTCTTCTTCCATTTCTCTTTACACCCATTTGCGCACTAACACCAACCTC AACCCCGATAACTTCACCTATGCCTTTTCCATTAATGCTGCTTCACGATTCAGTGATGAAAGATACGGTATGCTCTTGCATGCTCATGCCATCGTTGATG GGATGGCGTCTAACCCGTATGTGGGTTCCGCCCTTGCTGACTTGTATTGCAAGTTTTCACGTGTTGGGTATGCCAGGAAGGTGTTTGATAAAATGGCTGA CAGGGATACTGTGTTGTGGAACACCATCATTACTGGGTTGGTTAGGAATTGTTGTTATGAGTCTTCTTTTGAGGTGTTTAGGGATATGGTTGCAGATGGG GTTAGCTTGGATTACACAACGGTGGCTACTGTGCTTCCTGCTGTTGCTGAGATGCAAGAGCTGGGAGTGGGGATGGGGATTCAGTGTTTAGCTTTGAAAC TTGGGTTTCATTTTAATGCTTATGTGTTGACTGGTTTGATTTCTTTGTATTCCAAATGTGGGGATGTTGACACAGCCAGGTTATTGTTCAGGATGATTAG GAAACCAGACTTGGTATCTTATAATGCCATTATTTCTGGGTTTACTGGTAACGGTGAGACTGAATGCTCAGTGAAGCTTTTCAATGAATTACTTGTTTCT GGTGAAAGAGTCAGTTCAAGCACTATGGTTGGCTTGATTCCAGTGTCTTCGCCCTTTGGTCATCTGCATTTGGCTTGTTGTATTCAAGGTTTTTGCCTGA GATCTGGCACTATTTCAAATTCGTCTGTTTCAACTGCTCTCGTAACTGTTTACAGCAGACTCAATGAAATAGATTTGGCACGCCAGTTATTTGATGAATC ACCAGAGAAAACTGTGGCTGCTTGGAATGCTATGATTTCGGGTTATACACAGAATGGTTTAACAGAGACTGCTATCTCTCTTTTTCAGGAGATGATGACC ACTGATTTTGCACCTAATACAGTTACAATCACGACTACCCTTTCTGCTTGTGCACAACTAGGAGCACTAAGTTTTGGAAAATCGCTCCATCAGTTAATTA AAAGCAAAAACCTCGAGACAAACATTTATGTCTTGACTGCTCTGGTTGACATGTATGCCAAGTGTGGGAACATTTCGGAGGCTTTGCAGTTATTTGACTC AATGAGTGAAAAAAACACTGTTACTTGGAATACAATGATTTTTGGTTATGGGCTCCATGGATATGGGCGTGAAGCTCTTATGCTTTTCAATGAGATGTTA CATTTAGGTTTTCATCCATCTAGTGTTACTTTTCTTTCGGTCTTGTATGCTTGTAGTCATGCTGGCTTGGTAAGAGAAGGAGATGAAATTTTCCATGATA TGGTTAATAAATATGGGATTCAGCCCTTGACTGAGCACTATGCATGCATGGTGGACATTCTTGGGAGAGCTGGACAGTTAGAAAAAGCCTTAGAATTTAT TAGGAGCATGCCTGTTGAGCCAGGTCCTGCAGTATGGGGTACATTGCTTGGCGCTTGCATGACTCACAAAGACACAAACATAGCTAGTATTGCTTCAGAA AGACTATTTGAACTGGACCCAGGGAGCGTAGGATACCGAGTCTTGCTTTCTAATATATACTCTGTAGAGAGAAACTTCCCTAAGGCTGCTTCAATACGAG AAGGAGTCAAGAAAAGAAAACTGGCAAAGACTCCAGGGTGCACTCTAATTGAGGTTAATGGGATCCCACATGTATTTGTATCTGGGGATCGGTCTCATTC CCATGCAACAGCTATCTATGCAAAGCTGGAGAAGTTAACTAGCAAGATGAGAGAGATGGGGTATCATTCAGAGACAGTCACTGCTTTGCATGATGTGGAA GAAGAAGAAAAAGAGCTCATGGTTAATGTTCACAGTGAGAAGTTAGCCATTGCTTTTGGCCTTATTACAACTGAACCTGGTACTGAAATCACGATCATCA AGAATCTCCGGGTGTGTTTAGATTGCCATACTGCAACAAAATATATATCAAAGATCACAGAAAGATTGATAGTAGTAAGGGATGCTAACAGATTCCACCA TTTCAAAGATGGGATCTGTTCTTGTGGCGATTATTGGTGAAGCCAAATGAATAATTGTTCACAAGTTAATTTATGAGATAAGTGTCATCTATCCTTGTGA TTTCTTTCTTTACTTTGCAACAGTATGATCTGACCCTCCTATGATTGTCCACCTGAGAAGCGTGACATTTCATAGCATTGGTTGAGTAAAACTTTTTTTT TAATAAGGTCTGTTTGCCTATTATCCTTCACTTAAACATCCTACAGACCATTTTACTTTAAATCAACTAGCCTCCTAGATCTTTTACAAACACTATTAGC ATTGTGTTCTTTTGTTCATGCAGAAGGTGATGTTCTCCTTCGACAGTTTGGGCCAAAGCACATGTTAACCACACATCTTCTATACATTTACAAAAATGAG AAGCTGCATTTGCACTTCACAATTTTTTCACTCTTCCCTTGTACTTTTTTTGTTCACTCTTCATAAGTAAAATCAATAATTTATATATGTCTTCTTAAGA TGTTAACCAAAGAACACTGTAGGCAAACCAGTGTTTCAACAGTGGATTCCACACTGCTTGATATCAGGTCCCTTAGTCTTGAGCAAGAAAGGGTCAATTC TTTACCCAGAGCAAGGAGTAAATAGAAGCCAATAGCACTGACCATATGACAACAATGGTGGGTGTGTGTTTTGCCTGCCCATCAAACCTTTAAGGAACGT GTAATGGTGGACAATCAACCCGAAGGAAAAGAAGAGTTTTCCAAATAAAGTACCCCAGGATTGGTATCCATTGTTTATGGCATCTGAGATTCCAGCAACA ACCCCTACAATGTTGATTATCAAGACAGTGGTTGGAGGAATTAATAAAGTCGTCCATCCACTTGAAGGCCTATAATTCTCCAAAATCCTCATCATCTGTT TTCTTGGATGTAACAGTGAAGTTGGTGTCAATTCCAGCCAGAACCTTCAGAAGACCTTGTATTACAGCAAAGAGGTGTGCTGACACACCACCAATGACAC AGAATTGCTCATTTCAACTCGAGAATGCCCGTCGAAATGATTGAAGAGAAGAGAGCAATAAAGTACAACTAGATGAATGACTTACTATATGAAATTTGGC AGCATCTACGGATGCATCCACTGTAGAGAAAATAGATAGCTAAGGTAGCTTTTAGTAGACATGGTAGAGCATGAAGATTCTATGCATGACTTACTTTATA GATAGATACTCGATTCCATTCTATTCTGTTTGCAATCCATTCTTATTGCATGTTGGAACTTAGCCTCAATTAATGCAAGAGGACTTTTGGG
• Tissue: pods
• Gene name: LI_gene_150454;
• Additional information: details;

Expression of Ll_transcript_310548

FPKM

• PAB: 0.1
• PNAB: 1.2
• PS1: 1.2
• PS2: 0.9
• PS3: 1.7
• PW1: 1
• PW2: 1
• PW3: 1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_310548

• Blastp: Pentatricopeptide repeat-containing protein At4g30700 from Arabidopsis with 62.56% of identity
• Blastx: Pentatricopeptide repeat-containing protein At4g30700 from Arabidopsis with 62.56% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT4G30700)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462522.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;